Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00623X
(595 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC063023-1|AAH63023.1| 64|Homo sapiens NOLA3 protein protein. 93 7e-19
BC008886-1|AAH08886.1| 64|Homo sapiens nucleolar protein famil... 93 7e-19
AB043104-1|BAA96133.1| 64|Homo sapiens Nop10p protein. 93 7e-19
AB043103-1|BAA96107.1| 64|Homo sapiens Nop10p protein. 93 7e-19
X83929-1|CAA58781.1| 896|Homo sapiens desmocollin type 3 protein. 32 1.3
D17427-1|BAA04249.1| 896|Homo sapiens desmocollin type 4 protein. 32 1.3
AF297090-1|AAG17896.1| 316|Homo sapiens desmocollin 3 protein. 32 1.3
AF293359-1|AAG23426.1| 896|Homo sapiens desmocollin 3a protein. 32 1.3
X56807-2|CAA40142.1| 914|Homo sapiens desmocollin type 2b protein. 32 1.8
X56807-1|CAA40141.1| 860|Homo sapiens desmocollin type 2a protein. 32 1.8
BC063291-1|AAH63291.1| 901|Homo sapiens desmocollin 2 protein. 32 1.8
AF293359-2|AAG23427.1| 839|Homo sapiens desmocollin 3b protein. 32 1.8
AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sortin... 30 5.4
AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sortin... 30 5.4
AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sortin... 30 5.4
AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sortin... 30 5.4
AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sortin... 30 5.4
AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sortin... 30 5.4
AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein. 30 5.4
AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein. 30 5.4
AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis p... 30 5.4
AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein. 30 5.4
>BC063023-1|AAH63023.1| 64|Homo sapiens NOLA3 protein protein.
Length = 64
Score = 93.1 bits (221), Expect = 7e-19
Identities = 40/57 (70%), Positives = 48/57 (84%)
Frame = +2
Query: 83 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLT 253
M+L+YYLN++GDR YTL DP G+ T SAHPARFSP+DKYSRHRI IKKRF +L+T
Sbjct: 1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMT 57
>BC008886-1|AAH08886.1| 64|Homo sapiens nucleolar protein family
A, member 3 (H/ACA small nucleolar RNPs) protein.
Length = 64
Score = 93.1 bits (221), Expect = 7e-19
Identities = 40/57 (70%), Positives = 48/57 (84%)
Frame = +2
Query: 83 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLT 253
M+L+YYLN++GDR YTL DP G+ T SAHPARFSP+DKYSRHRI IKKRF +L+T
Sbjct: 1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMT 57
>AB043104-1|BAA96133.1| 64|Homo sapiens Nop10p protein.
Length = 64
Score = 93.1 bits (221), Expect = 7e-19
Identities = 40/57 (70%), Positives = 48/57 (84%)
Frame = +2
Query: 83 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLT 253
M+L+YYLN++GDR YTL DP G+ T SAHPARFSP+DKYSRHRI IKKRF +L+T
Sbjct: 1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMT 57
>AB043103-1|BAA96107.1| 64|Homo sapiens Nop10p protein.
Length = 64
Score = 93.1 bits (221), Expect = 7e-19
Identities = 40/57 (70%), Positives = 48/57 (84%)
Frame = +2
Query: 83 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLT 253
M+L+YYLN++GDR YTL DP G+ T SAHPARFSP+DKYSRHRI IKKRF +L+T
Sbjct: 1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMT 57
>X83929-1|CAA58781.1| 896|Homo sapiens desmocollin type 3 protein.
Length = 896
Score = 32.3 bits (70), Expect = 1.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 555 HHDLE*CQGARSNVDNCKGPMYQWGRLRLPQ-SDKNH 448
HH L+ C+G + VDNC+ +W P+ +K H
Sbjct: 798 HHTLDSCRGGHTEVDNCRYTYSEWHSFTQPRLGEKLH 834
>D17427-1|BAA04249.1| 896|Homo sapiens desmocollin type 4 protein.
Length = 896
Score = 32.3 bits (70), Expect = 1.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 555 HHDLE*CQGARSNVDNCKGPMYQWGRLRLPQ-SDKNH 448
HH L+ C+G + VDNC+ +W P+ +K H
Sbjct: 798 HHTLDSCRGGHTEVDNCRYTYSEWHSFTQPRLGEKLH 834
>AF297090-1|AAG17896.1| 316|Homo sapiens desmocollin 3 protein.
Length = 316
Score = 32.3 bits (70), Expect = 1.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 555 HHDLE*CQGARSNVDNCKGPMYQWGRLRLPQ-SDKNH 448
HH L+ C+G + VDNC+ +W P+ +K H
Sbjct: 218 HHTLDSCRGGHTEVDNCRYTYSEWHSFTQPRLGEKLH 254
>AF293359-1|AAG23426.1| 896|Homo sapiens desmocollin 3a protein.
Length = 896
Score = 32.3 bits (70), Expect = 1.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 555 HHDLE*CQGARSNVDNCKGPMYQWGRLRLPQ-SDKNH 448
HH L+ C+G + VDNC+ +W P+ +K H
Sbjct: 798 HHTLDSCRGGHTEVDNCRYTYSEWHSFTQPRLGEKLH 834
>X56807-2|CAA40142.1| 914|Homo sapiens desmocollin type 2b protein.
Length = 914
Score = 31.9 bits (69), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 555 HHDLE*CQGARSNVDNCKGPMYQWGRLRLPQ 463
HH L+ C+G + VDNC+ +W P+
Sbjct: 816 HHTLDSCRGGHTEVDNCRYTYSEWHSFTQPR 846
>X56807-1|CAA40141.1| 860|Homo sapiens desmocollin type 2a protein.
Length = 860
Score = 31.9 bits (69), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 555 HHDLE*CQGARSNVDNCKGPMYQWGRLRLPQ 463
HH L+ C+G + VDNC+ +W P+
Sbjct: 816 HHTLDSCRGGHTEVDNCRYTYSEWHSFTQPR 846
>BC063291-1|AAH63291.1| 901|Homo sapiens desmocollin 2 protein.
Length = 901
Score = 31.9 bits (69), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 555 HHDLE*CQGARSNVDNCKGPMYQWGRLRLPQ 463
HH L+ C+G + VDNC+ +W P+
Sbjct: 803 HHTLDSCRGGHTEVDNCRYTYSEWHSFTQPR 833
>AF293359-2|AAG23427.1| 839|Homo sapiens desmocollin 3b protein.
Length = 839
Score = 31.9 bits (69), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 555 HHDLE*CQGARSNVDNCKGPMYQWGRLRLPQ 463
HH L+ C+G + VDNC+ +W P+
Sbjct: 798 HHTLDSCRGGHTEVDNCRYTYSEWHSFTQPR 828
>AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3174
Score = 30.3 bits (65), Expect = 5.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 536 HHSKSWWQYSSHSTVRREVC 595
HH++ WW Y+ H + VC
Sbjct: 325 HHAREWWAYAIHGVLEVNVC 344
>AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3095
Score = 30.3 bits (65), Expect = 5.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 536 HHSKSWWQYSSHSTVRREVC 595
HH++ WW Y+ H + VC
Sbjct: 325 HHAREWWAYAIHGVLEVNVC 344
>AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3174
Score = 30.3 bits (65), Expect = 5.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 536 HHSKSWWQYSSHSTVRREVC 595
HH++ WW Y+ H + VC
Sbjct: 325 HHAREWWAYAIHGVLEVNVC 344
>AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3095
Score = 30.3 bits (65), Expect = 5.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 536 HHSKSWWQYSSHSTVRREVC 595
HH++ WW Y+ H + VC
Sbjct: 325 HHAREWWAYAIHGVLEVNVC 344
>AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3174
Score = 30.3 bits (65), Expect = 5.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 536 HHSKSWWQYSSHSTVRREVC 595
HH++ WW Y+ H + VC
Sbjct: 325 HHAREWWAYAIHGVLEVNVC 344
>AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3095
Score = 30.3 bits (65), Expect = 5.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 536 HHSKSWWQYSSHSTVRREVC 595
HH++ WW Y+ H + VC
Sbjct: 325 HHAREWWAYAIHGVLEVNVC 344
>AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein.
Length = 3069
Score = 30.3 bits (65), Expect = 5.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 536 HHSKSWWQYSSHSTVRREVC 595
HH++ WW Y+ H + VC
Sbjct: 325 HHAREWWAYAIHGVLEVNVC 344
>AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein.
Length = 3135
Score = 30.3 bits (65), Expect = 5.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 536 HHSKSWWQYSSHSTVRREVC 595
HH++ WW Y+ H + VC
Sbjct: 325 HHAREWWAYAIHGVLEVNVC 344
>AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis
protein.
Length = 3174
Score = 30.3 bits (65), Expect = 5.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 536 HHSKSWWQYSSHSTVRREVC 595
HH++ WW Y+ H + VC
Sbjct: 325 HHAREWWAYAIHGVLEVNVC 344
>AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein.
Length = 3095
Score = 30.3 bits (65), Expect = 5.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 536 HHSKSWWQYSSHSTVRREVC 595
HH++ WW Y+ H + VC
Sbjct: 325 HHAREWWAYAIHGVLEVNVC 344
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,748,902
Number of Sequences: 237096
Number of extensions: 1627628
Number of successful extensions: 2259
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2259
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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