Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00623X
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20490.1 68415.m02392 nucleolar RNA-binding Nop10p family pro...    82   2e-16
At5g38090.1 68418.m04589 hypothetical protein                          27   9.4  
At5g19540.1 68418.m02327 expressed protein                             27   9.4  

>At2g20490.1 68415.m02392 nucleolar RNA-binding Nop10p family
           protein similar to Nop10p (GI:8096260) [Homo sapiens]
          Length = 64

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 36/62 (58%), Positives = 46/62 (74%)
 Frame = +2

Query: 83  MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTHNL 262
           MYL+ Y+N+KG++ YT     P G  T SAHPARFSP+DKYS+ R+++KKRFGLL T N 
Sbjct: 1   MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNA 60

Query: 263 NL 268
            L
Sbjct: 61  PL 62


>At5g38090.1 68418.m04589 hypothetical protein 
          Length = 146

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 294 CKSI-FILMNRFRLCVSSRPNLFLIIILCLEY 202
           C +I F++      C+S+R  LF+++  CL Y
Sbjct: 76  CNNIGFVIFLHLLYCISTRLALFVVLHFCLPY 107


>At5g19540.1 68418.m02327 expressed protein
          Length = 462

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 461 DCGNLSLPHWYIGPLQLSTFDLAP*HHSKSWWQYSSHSTVR 583
           DC +    +WY   L   TF L      +S++ ++   T+R
Sbjct: 196 DCLDYDTENWYHADLDFETFQLLQKEKGESFFSFARDMTIR 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,945,496
Number of Sequences: 28952
Number of extensions: 233719
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)