Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00620X
(553 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 160 2e-38
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 153 2e-36
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 152 6e-36
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 142 4e-33
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 132 4e-30
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 122 6e-27
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 120 3e-26
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 119 4e-26
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 118 1e-25
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 112 6e-24
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 105 5e-22
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 86 4e-16
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 83 3e-15
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 76 5e-13
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 76 6e-13
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 73 3e-12
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 69 1e-10
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 69 1e-10
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 66 7e-10
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 63 4e-09
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 61 2e-08
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 58 1e-07
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 55 1e-06
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 54 2e-06
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 54 3e-06
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 53 4e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 52 9e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 52 1e-05
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 50 3e-05
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 46 6e-04
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 46 8e-04
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 46 8e-04
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 43 0.005
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 41 0.022
UniRef50_A5G642 Cluster: Beta-ketoacyl synthase; n=1; Geobacter ... 34 2.5
UniRef50_Q2GDM2 Cluster: Putative membrane protein; n=1; Neorick... 33 4.4
UniRef50_A5I114 Cluster: Putative acetyltransferase; n=4; Clostr... 33 5.8
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 5.8
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 32 7.7
UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 32 7.7
UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative; ... 32 7.7
UniRef50_A4RGR3 Cluster: Putative uncharacterized protein; n=1; ... 32 7.7
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 160 bits (389), Expect = 2e-38
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
PKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KI
Sbjct: 5 PKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKI 64
Query: 183 VKQRLIKVDGKVRTDPTYAAGFMDLSQLRR 272
V QRL+KVDGKVRTDPTY AG+MD+ L +
Sbjct: 65 VMQRLVKVDGKVRTDPTYPAGYMDVITLEK 94
Score = 137 bits (331), Expect = 2e-31
Identities = 60/89 (67%), Positives = 72/89 (80%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRY 436
+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTH+GRTIRY
Sbjct: 90 ITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRY 149
Query: 437 PDPLIKVNDSIQLDIATTKIMDFINLSLG 523
PDPLI NDS+Q+DIA+ KI D+I G
Sbjct: 150 PDPLIHANDSVQVDIASGKITDYIKFDSG 178
Score = 34.3 bits (75), Expect = 1.9
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +1
Query: 508 QFESGNLCMITGGRN 552
+F+SGNLCMITGGRN
Sbjct: 174 KFDSGNLCMITGGRN 188
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 153 bits (372), Expect = 2e-36
Identities = 70/85 (82%), Positives = 76/85 (89%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
PKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 5 PKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI 64
Query: 183 VKQRLIKVDGKVRTDPTYAAGFMDL 257
QR IK+DGKVRTD TY AGFMD+
Sbjct: 65 CMQRFIKIDGKVRTDITYPAGFMDV 89
Score = 140 bits (340), Expect = 1e-32
Identities = 61/89 (68%), Positives = 73/89 (82%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRY 436
+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTH+ RTIRY
Sbjct: 90 ISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRY 149
Query: 437 PDPLIKVNDSIQLDIATTKIMDFINLSLG 523
PDPLIKVND+IQ+D+ T KI DFI G
Sbjct: 150 PDPLIKVNDTIQIDLETGKITDFIKFDTG 178
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 152 bits (368), Expect = 6e-36
Identities = 69/85 (81%), Positives = 75/85 (88%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
PKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 5 PKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI 64
Query: 183 VKQRLIKVDGKVRTDPTYAAGFMDL 257
QR IK+DGKVRTD TY GFMD+
Sbjct: 65 CMQRFIKIDGKVRTDITYPTGFMDV 89
Score = 85.8 bits (203), Expect(2) = 9e-27
Identities = 35/54 (64%), Positives = 46/54 (85%)
Frame = +2
Query: 347 KYKLCKVKRVATGPKNVPYLVTHEGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 508
+YKLCKVK++ G K +P+LVTH+ RTIRYPDPLIKVND++++D+ T KI DFI
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFI 205
Score = 56.8 bits (131), Expect(2) = 9e-27
Identities = 25/31 (80%), Positives = 28/31 (90%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAK 349
+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 90 ISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 142 bits (345), Expect = 4e-33
Identities = 64/84 (76%), Positives = 73/84 (86%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISIL 65
Query: 186 KQRLIKVDGKVRTDPTYAAGFMDL 257
QR I+VDGKVRTD TY AGFMD+
Sbjct: 66 MQRHIQVDGKVRTDKTYPAGFMDV 89
Score = 125 bits (301), Expect = 8e-28
Identities = 56/92 (60%), Positives = 70/92 (76%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRY 436
VSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T++GRTIRY
Sbjct: 90 VSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRY 149
Query: 437 PDPLIKVNDSIQLDIATTKIMDFINLSLGTYV 532
PDPLIK ND+I+LD+ KI++FI +G V
Sbjct: 150 PDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 132 bits (320), Expect = 4e-30
Identities = 58/95 (61%), Positives = 69/95 (72%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
P+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV I
Sbjct: 5 PRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMI 64
Query: 183 VKQRLIKVDGKVRTDPTYAAGFMDLSQLRRLMNCF 287
VK R IK+DGK+RTD Y GFMD+ + R F
Sbjct: 65 VKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99
Score = 102 bits (245), Expect = 5e-21
Identities = 43/89 (48%), Positives = 66/89 (74%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRY 436
+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTH+GRTIRY
Sbjct: 90 LSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRY 149
Query: 437 PDPLIKVNDSIQLDIATTKIMDFINLSLG 523
P P ++ ND+I+L++ T KI+DF+ +G
Sbjct: 150 PHPELQANDTIKLNLETGKIVDFVKFDIG 178
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 122 bits (294), Expect = 6e-27
Identities = 55/71 (77%), Positives = 61/71 (85%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 5 PRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI 64
Query: 183 VKQRLIKVDGK 215
Q IK+DGK
Sbjct: 65 RMQHFIKMDGK 75
Score = 112 bits (270), Expect = 4e-24
Identities = 48/75 (64%), Positives = 59/75 (78%)
Frame = +2
Query: 299 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRYPDPLIKVNDSIQLD 478
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTH+ RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 479 IATTKIMDFINLSLG 523
+ T KI DF G
Sbjct: 136 LETGKITDFFKFDTG 150
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 120 bits (288), Expect = 3e-26
Identities = 56/92 (60%), Positives = 67/92 (72%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 191
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 192 RLIKVDGKVRTDPTYAAGFMDLSQLRRLMNCF 287
RL+KVDGKVRT+ Y G MD+ +L + F
Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
Score = 95.9 bits (228), Expect = 6e-19
Identities = 39/89 (43%), Positives = 62/89 (69%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRY 436
+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTH+GRTI Y
Sbjct: 104 IELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISY 163
Query: 437 PDPLIKVNDSIQLDIATTKIMDFINLSLG 523
DP ++V+D+++ +I T ++ I +G
Sbjct: 164 VDPSVRVHDALKFNIKTGEVESVIKFKVG 192
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 119 bits (287), Expect = 4e-26
Identities = 59/91 (64%), Positives = 69/91 (75%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
PK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI
Sbjct: 16 PKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDEVKKI 74
Query: 183 VKQRLIKVDGKVRTDPTYAAGFMDLSQLRRL 275
Q IKVDGK+RTD MD+ + ++
Sbjct: 75 CMQWFIKVDGKIRTDNNLPYWIMDVISIDKM 105
Score = 106 bits (255), Expect = 3e-22
Identities = 46/85 (54%), Positives = 62/85 (72%)
Frame = +2
Query: 242 WIYGFVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEG 421
WI +SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV H+
Sbjct: 95 WIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDI 154
Query: 422 RTIRYPDPLIKVNDSIQLDIATTKI 496
T+R+PD LIKVND+IQ+D+ T KI
Sbjct: 155 HTVRHPDSLIKVNDTIQIDLETGKI 179
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 118 bits (283), Expect = 1e-25
Identities = 54/87 (62%), Positives = 64/87 (73%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 186 KQRLIKVDGKVRTDPTYAAGFMDLSQL 266
+Q L+ VD R D Y AGFMD+ ++
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGFMDVVEI 89
Score = 80.6 bits (190), Expect = 2e-14
Identities = 40/92 (43%), Positives = 53/92 (57%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRY 436
V I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTH+G IRY
Sbjct: 87 VEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRY 146
Query: 437 PDPLIKVNDSIQLDIATTKIMDFINLSLGTYV 532
PDP + D+I ++ K +D I G V
Sbjct: 147 PDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAV 178
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 112 bits (269), Expect = 6e-24
Identities = 49/90 (54%), Positives = 69/90 (76%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRY 436
+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTH+GRTIR+
Sbjct: 90 ISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRF 149
Query: 437 PDPLIKVNDSIQLDIATTKIMDFINLSLGT 526
P+ LIK NDSI LD+ K++DFI S+G+
Sbjct: 150 PNLLIKSNDSIVLDLLNNKVIDFIKFSIGS 179
Score = 111 bits (266), Expect = 1e-23
Identities = 49/88 (55%), Positives = 65/88 (73%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+
Sbjct: 6 KKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNIL 65
Query: 186 KQRLIKVDGKVRTDPTYAAGFMDLSQLR 269
K+ I VDGKVR D + AG MD+ ++
Sbjct: 66 KKNEIYVDGKVRADKNFPAGVMDVISIK 93
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 105 bits (253), Expect = 5e-22
Identities = 45/89 (50%), Positives = 64/89 (71%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRY 436
V IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTH+ RTIR+
Sbjct: 202 VRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRF 261
Query: 437 PDPLIKVNDSIQLDIATTKIMDFINLSLG 523
P+P IK+ D+++ D+ KI +F +L G
Sbjct: 262 PNPEIKIGDTLKYDLVNNKIENFAHLESG 290
Score = 81.4 bits (192), Expect = 1e-14
Identities = 53/126 (42%), Positives = 68/126 (53%), Gaps = 31/126 (24%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLD-------------------------KLGGVY----APRPSTGP 95
PKKHLKR+NAPK+WML+ KL +Y A RPS GP
Sbjct: 86 PKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQGP 145
Query: 96 HKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYAAGFMDLSQLR 269
HKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D Y G MD+ ++
Sbjct: 146 HKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIE 205
Query: 270 RLMNCF 287
+ F
Sbjct: 206 KTDQSF 211
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 86.2 bits (204), Expect = 4e-16
Identities = 38/89 (42%), Positives = 57/89 (64%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
+ HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+
Sbjct: 6 RDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIIL 65
Query: 186 KQRLIKVDGKVRTDPTYAAGFMDLSQLRR 272
++ IKV+G+VRT+ + G D+ + +
Sbjct: 66 AEKNIKVNGRVRTNSHFPVGLFDVVSIEK 94
Score = 74.5 bits (175), Expect = 1e-12
Identities = 35/88 (39%), Positives = 60/88 (68%)
Frame = +2
Query: 245 IYGFVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGR 424
++ VSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G
Sbjct: 86 LFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGL 144
Query: 425 TIRYPDPLIKVNDSIQLDIATTKIMDFI 508
+IR+ DP I + +I++ T+K++++I
Sbjct: 145 SIRFCDPAIDLGYTIKISNETSKVIEYI 172
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 83.4 bits (197), Expect = 3e-15
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 179
PK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E K
Sbjct: 8 PKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARK 67
Query: 180 IVKQRLIKVDGKVRTDPTYAAGFMDLSQLRR 272
I+ + I VDG VR +P + G MD+ ++ R
Sbjct: 68 IITRGEIYVDGVVRKEPKFPVGIMDVVEIPR 98
Score = 33.5 bits (73), Expect = 3.3
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Frame = +2
Query: 245 IYGFVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGR 424
I V I +T + +R++ + R + I+ EEA+ K+C++K + H+G+
Sbjct: 90 IMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGK 149
Query: 425 T--IRYPDP------LIKVNDSIQLDI------ATTKIMDFINLSLGTYV 532
+ DP + V DS+ L++ + K++D I G +V
Sbjct: 150 NWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWV 199
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 76.2 bits (179), Expect = 5e-13
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +3
Query: 12 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 188
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 189 QRLIKVDGKVRTDPTYAAGFMDLSQL 266
+ +KVDG VR D + G MD+ ++
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEI 88
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 75.8 bits (178), Expect = 6e-13
Identities = 36/85 (42%), Positives = 51/85 (60%)
Frame = +3
Query: 3 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
P+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E KI
Sbjct: 6 PRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKI 65
Query: 183 VKQRLIKVDGKVRTDPTYAAGFMDL 257
++ I +DG R + + AG MD+
Sbjct: 66 IQTGKILIDGLKRKEYKHPAGLMDV 90
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 73.3 bits (172), Expect = 3e-12
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 191
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 192 RLIKVDGKVRTDPTYAAGFMDLSQL 266
+KVDGKVR D Y G MD+ +L
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIEL 87
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 68.5 bits (160), Expect = 1e-10
Identities = 33/83 (39%), Positives = 49/83 (59%)
Frame = +3
Query: 9 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 188
+HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +I+
Sbjct: 10 RHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILA 69
Query: 189 QRLIKVDGKVRTDPTYAAGFMDL 257
R+I+VDG+V TD + G MD+
Sbjct: 70 SRVIEVDGRVVTDYKFPVGLMDV 92
Score = 32.7 bits (71), Expect = 5.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 284 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTI 430
+R++ D + I PEEA YKL +++R T H+GR +
Sbjct: 102 YRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNV 150
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 68.5 bits (160), Expect = 1e-10
Identities = 32/87 (36%), Positives = 51/87 (58%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K++
Sbjct: 7 QRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLI 66
Query: 186 KQRLIKVDGKVRTDPTYAAGFMDLSQL 266
+ +VDG VR D + GFMD+ ++
Sbjct: 67 SEGHFRVDGVVRKDYKFPVGFMDVIEV 93
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 65.7 bits (153), Expect = 7e-10
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 191
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 192 RLIKVDGKVRTDPTYAAGFMD 254
+ VDGKVR D Y G D
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFD 85
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 63.3 bits (147), Expect = 4e-09
Identities = 29/87 (33%), Positives = 45/87 (51%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
+KHLK APK W + + +PS G H + L L + +R+ LK A E +I+
Sbjct: 7 RKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRII 66
Query: 186 KQRLIKVDGKVRTDPTYAAGFMDLSQL 266
+ VDG+V D + GFMD+ ++
Sbjct: 67 NSGNVLVDGRVIKDYKFPVGFMDIIEI 93
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 60.9 bits (141), Expect = 2e-08
Identities = 27/82 (32%), Positives = 45/82 (54%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 191
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 192 RLIKVDGKVRTDPTYAAGFMDL 257
R + VDG++ TD G MD+
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDV 86
Score = 33.5 bits (73), Expect = 3.3
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 284 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRYPD 442
FR I DV G+ I+ + A KLC+V +T + H+GR I D
Sbjct: 94 FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSD 146
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 58.0 bits (134), Expect = 1e-07
Identities = 31/85 (36%), Positives = 44/85 (51%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 191
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 192 RLIKVDGKVRTDPTYAAGFMDLSQL 266
+ VDGKVR D Y G MD+ ++
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEI 87
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 54.8 bits (126), Expect = 1e-06
Identities = 24/82 (29%), Positives = 40/82 (48%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 191
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 192 RLIKVDGKVRTDPTYAAGFMDL 257
+ VDG R D + G MD+
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDI 85
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 54.0 bits (124), Expect = 2e-06
Identities = 27/80 (33%), Positives = 43/80 (53%)
Frame = +3
Query: 18 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 197
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 198 IKVDGKVRTDPTYAAGFMDL 257
+ ++G + TD D+
Sbjct: 64 VLLNGHIVTDEHIGIDVFDI 83
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 53.6 bits (123), Expect = 3e-06
Identities = 27/85 (31%), Positives = 41/85 (48%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 191
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 192 RLIKVDGKVRTDPTYAAGFMDLSQL 266
+ VDG R D + G D+ L
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITL 87
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 53.2 bits (122), Expect = 4e-06
Identities = 29/89 (32%), Positives = 47/89 (52%)
Frame = +3
Query: 9 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 188
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 189 QRLIKVDGKVRTDPTYAAGFMDLSQLRRL 275
QR + V+G+ D G D+ + +L
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKL 90
Score = 38.7 bits (86), Expect = 0.089
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +2
Query: 245 IYGFVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGR 424
++ VSI K + +R+ DVKG I E AK +LCK++ T L G
Sbjct: 81 VFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGA 140
Query: 425 TIRYPDPLIKVNDSIQLDIAT 487
+ D K DS+ + + T
Sbjct: 141 NV-LADNTYKAKDSVVVTLGT 160
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 52.0 bits (119), Expect = 9e-06
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +2
Query: 251 GFVSIEKTN-ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRT 427
GF+ + + N E +R++Y+ +G + + T E A KL KV+ P N L TH+GRT
Sbjct: 81 GFMDVIEINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRT 140
Query: 428 IRYPDPLIKVNDSIQLDIATTKIMDFINLSLG 523
D KV D + + KI + I + G
Sbjct: 141 FITDDKSKKVGDVWAVSVPDMKISEIIKMQPG 172
Score = 47.2 bits (107), Expect = 3e-04
Identities = 24/83 (28%), Positives = 43/83 (51%)
Frame = +3
Query: 18 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 197
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 198 IKVDGKVRTDPTYAAGFMDLSQL 266
+KVDGK + +A GFMD+ ++
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEI 88
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 51.6 bits (118), Expect = 1e-05
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 183 VKQRLIKVDGKVRTDPTYAAGFMDL 257
+ + VDG+ D + G D+
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLFDV 90
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 50.4 bits (115), Expect = 3e-05
Identities = 23/91 (25%), Positives = 47/91 (51%)
Frame = +3
Query: 18 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 197
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 198 IKVDGKVRTDPTYAAGFMDLSQLRRLMNCFV 290
+KVDG++ D + GFMD+ + L N ++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
Score = 34.7 bits (76), Expect = 1.4
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHEGRTIR 433
+SI+ + ++YD KG+ I + P KL K VK+ G + L H+G+TI
Sbjct: 87 LSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIV 145
Query: 434 YPDPLIKVNDSIQLDIATTKIMDFINLSLGTYV 532
I +D + + I +I + + ++ G V
Sbjct: 146 TDRKDINTSDVLLMKIPDLEIENVLKIAEGDKV 178
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 46.0 bits (104), Expect = 6e-04
Identities = 26/79 (32%), Positives = 39/79 (49%)
Frame = +3
Query: 18 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 197
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 198 IKVDGKVRTDPTYAAGFMD 254
+ VDGKV + GFMD
Sbjct: 66 VMVDGKVVKERRRGIGFMD 84
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 45.6 bits (103), Expect = 8e-04
Identities = 26/86 (30%), Positives = 38/86 (44%)
Frame = +3
Query: 9 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 188
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 189 QRLIKVDGKVRTDPTYAAGFMDLSQL 266
++VDG RT + G MD+ +L
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVEL 93
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 45.6 bits (103), Expect = 8e-04
Identities = 23/82 (28%), Positives = 40/82 (48%)
Frame = +3
Query: 12 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 191
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 192 RLIKVDGKVRTDPTYAAGFMDL 257
+ ++GK +D G D+
Sbjct: 63 DNVLINGKAISDEERPVGMFDI 84
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 42.7 bits (96), Expect = 0.005
Identities = 20/90 (22%), Positives = 43/90 (47%)
Frame = +2
Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRY 436
+S N+ +R++ G+ T++ I E K+CKV ++ ++T + R ++
Sbjct: 90 ISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKI 149
Query: 437 PDPLIKVNDSIQLDIATTKIMDFINLSLGT 526
IKV DS+ + +I+ + +G+
Sbjct: 150 NYAKIKVEDSLLIKTINDEIVYALKFEVGS 179
Score = 38.3 bits (85), Expect = 0.12
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = +3
Query: 6 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 185
KKH KR+++ K G++ + S+GPH + + L+ ++ A E K+V
Sbjct: 6 KKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVV 65
Query: 186 KQRLIKVDGKVRTDPTYAAGFMD 254
K + V+GK + MD
Sbjct: 66 KTGFLYVNGKKCLSHKFPISLMD 88
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 40.7 bits (91), Expect = 0.022
Identities = 27/90 (30%), Positives = 46/90 (51%)
Frame = -1
Query: 526 SSQTQIDEVHNLRSCDV*LDGIVDFDKWVWVADGAALMRYQVRNILRSGRHTLDFTQLVL 347
S+ ++D + +L DV +G+ D + V +GAA+++ R+ L QLVL
Sbjct: 102 SADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVL 161
Query: 346 SLLRGDTVDCESALNIID*TKQFISLLN*D 257
D V ES+L ++D + FI+L + D
Sbjct: 162 RFDSLDAVHNESSLGVVDEPEVFIALFDGD 191
>UniRef50_A5G642 Cluster: Beta-ketoacyl synthase; n=1; Geobacter
uraniumreducens Rf4|Rep: Beta-ketoacyl synthase -
Geobacter uraniumreducens Rf4
Length = 7157
Score = 33.9 bits (74), Expect = 2.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 439 RPTYQSQRFHPVRHRNYEDYGLHQFES 519
+P YQ QR HP+ H+N D+ +F S
Sbjct: 1477 KPEYQEQRIHPLLHQNASDFSEQRFSS 1503
>UniRef50_Q2GDM2 Cluster: Putative membrane protein; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: Putative
membrane protein - Neorickettsia sennetsu (strain
Miyayama)
Length = 493
Score = 33.1 bits (72), Expect = 4.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 120 LVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYAA 242
L F +N L Y L G E+L ++ LI G V+ TYAA
Sbjct: 76 LFTFFQNNLFYILLGLEILSLIYSTLIASQGNVKGAITYAA 116
>UniRef50_A5I114 Cluster: Putative acetyltransferase; n=4;
Clostridium botulinum|Rep: Putative acetyltransferase -
Clostridium botulinum A str. ATCC 3502
Length = 168
Score = 32.7 bits (71), Expect = 5.8
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Frame = +2
Query: 245 IYGFVSIEKTNELFRLIYDVK------GRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 406
+YG+ +EK +++ L+ D K G+ +++I E K C + PKN+
Sbjct: 66 LYGYCEMEKHYKVWTLLIDHKFQGKGFGKAALNKIIEELKNNKDCNEIYLNFHPKNIKAK 125
Query: 407 VTHEGRTIRYPDPLIKVNDSIQLDIATTKIMDFINLSL 520
+E RY I +N + D+ ++I + IN L
Sbjct: 126 KLYESLGFRYTGEKIWINKKLYEDV-YSEIYEGINYEL 162
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 5.8
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +3
Query: 45 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 206
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 32.3 bits (70), Expect = 7.7
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -2
Query: 123 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASN 13
PG RAT GD + VSV T+R PTS+ W ++ N
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRN 128
>UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas mendocina ymp
Length = 783
Score = 32.3 bits (70), Expect = 7.7
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 472 LDGIVDFDKWVWVADGAALMRYQVRNILRSGRHTLDFTQLVLSLLR 335
L+ I+ F + + + G + QVR+ILR+GRH L VL + R
Sbjct: 420 LNSILGFAQLLEMDRGTPAQQAQVRHILRAGRHLLGLINEVLDIAR 465
>UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative;
n=2; Trichomonas vaginalis G3|Rep: Ser/Thr protein
phosphatase, putative - Trichomonas vaginalis G3
Length = 475
Score = 32.3 bits (70), Expect = 7.7
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 439 WV-ADGAALMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNI 299
WV G RY+ R R+ H + + +LL D VDCE+ LNI
Sbjct: 412 WVRTTGEGQWRYRERIYTRADEHNAFYYCALKALLPDDIVDCENKLNI 459
>UniRef50_A4RGR3 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 664
Score = 32.3 bits (70), Expect = 7.7
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 189 VSQFSGLRFRSKHTSDDSLGKSPGASTRATCGDRLTVSVH--THRQVCPTS 43
+S S +R + T DS+ S G+S+ +TC +V +H H V P+S
Sbjct: 515 ISLASPIRTPTNQTDSDSMTMSIGSSSSSTCSSASSVRIHRRAHSAVTPSS 565
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,135,205
Number of Sequences: 1657284
Number of extensions: 12380956
Number of successful extensions: 34700
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 33564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34689
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36238783989
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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