Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00620X
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   141   7e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   141   7e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   140   1e-34
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    29   0.60 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    28   0.80 
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    27   1.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.2  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   5.6  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   5.6  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   7.4  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   7.4  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   9.8  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  141 bits (341), Expect = 7e-35
 Identities = 63/92 (68%), Positives = 74/92 (80%)
 Frame = +2

Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRY 436
           +S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTH+GRTIRY
Sbjct: 90  ISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRY 149

Query: 437 PDPLIKVNDSIQLDIATTKIMDFINLSLGTYV 532
           PDPLIKVND+I+L++ T KI  FI       V
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQV 181



 Score =  140 bits (340), Expect = 9e-35
 Identities = 62/90 (68%), Positives = 72/90 (80%)
 Frame = +3

Query: 3   PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
           PKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I
Sbjct: 5   PKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAI 64

Query: 183 VKQRLIKVDGKVRTDPTYAAGFMDLSQLRR 272
           + QRLIKVDGKVRTD T+  GFMD+  + +
Sbjct: 65  LMQRLIKVDGKVRTDSTFPTGFMDVISVEK 94


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  141 bits (341), Expect = 7e-35
 Identities = 63/92 (68%), Positives = 74/92 (80%)
 Frame = +2

Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRY 436
           +S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTH+GRTIRY
Sbjct: 90  ISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRY 149

Query: 437 PDPLIKVNDSIQLDIATTKIMDFINLSLGTYV 532
           PDPLIKVND+I+L++ T KI  FI       V
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQV 181



 Score =  139 bits (336), Expect = 3e-34
 Identities = 61/90 (67%), Positives = 72/90 (80%)
 Frame = +3

Query: 3   PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
           PKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I
Sbjct: 5   PKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAI 64

Query: 183 VKQRLIKVDGKVRTDPTYAAGFMDLSQLRR 272
           + QRLI+VDGKVRTD T+  GFMD+  + +
Sbjct: 65  LMQRLIQVDGKVRTDSTFPTGFMDVISVEK 94


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  140 bits (339), Expect = 1e-34
 Identities = 62/85 (72%), Positives = 70/85 (82%)
 Frame = +3

Query: 3   PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
           PKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I
Sbjct: 5   PKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAI 64

Query: 183 VKQRLIKVDGKVRTDPTYAAGFMDL 257
           + QRLIKVDGKVRTD T+  GFMD+
Sbjct: 65  LMQRLIKVDGKVRTDSTFPTGFMDV 89



 Score =  140 bits (338), Expect = 2e-34
 Identities = 62/92 (67%), Positives = 74/92 (80%)
 Frame = +2

Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRY 436
           +S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTH+GRTIRY
Sbjct: 90  ISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRY 149

Query: 437 PDPLIKVNDSIQLDIATTKIMDFINLSLGTYV 532
           PDPLIKVND+I+L++ T KI  FI       V
Sbjct: 150 PDPLIKVNDTIKLNLETNKIESFIKFDTSAQV 181


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +3

Query: 114 LPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYAAGFM--DLSQLRRLMNCF 287
           LPLV    ++ +   + N  L IV Q L+     V     Y    +  +LS+++ L+NCF
Sbjct: 376 LPLVKQYDHKFRNLYSPNIFLSIV-QALVFCGDMVNIQRWYNMSRVNSELSRIKHLLNCF 434

Query: 288 V*SMMLRADSQSTVSPLRRLSTSCVK 365
           + S  +  D    +  LR L    +K
Sbjct: 435 LNSSTVSLDVSMVLELLRDLKKKKIK 460


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 451 QSQRFHPVRHRNYEDYGLHQFES 519
           ++++ HPVRH  YED     FE+
Sbjct: 5   ENEKIHPVRHSKYEDKSKLPFET 27


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 20/86 (23%), Positives = 34/86 (39%)
 Frame = -2

Query: 324 WIVNLPLTS*IRRNSSLVFSIETNP*IQQHK*GQSSLSHQPL*GVVSQFSGLRFRSKHTS 145
           W+V          + SL+      P ++  K G    + +   G +   + L  ++ HTS
Sbjct: 237 WLVEFSSVCQAAESISLIAVNNNRPPVELPKSGDVLSNREWEAGKIDAMNSLIAQNLHTS 296

Query: 144 DDSLGKSPGASTRATCGDRLTVSVHT 67
              +  SP AST ++      V  HT
Sbjct: 297 ASQVSLSPMASTASSSVTNSPVDTHT 322


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 260  SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHEGRTIR 433
            S+EK N++F + Y+V  +     +   +   K+  ++ ++   KNVP + V H+   ++
Sbjct: 1721 SLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEMLK 1779


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 421 PHHPLPRPTYQSQRFHPVRHRNYEDY 498
           PH+  P    + Q+ HPV+  N+  Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 346 SLLRGDTVDCESALNIID*TKQ 281
           S  RGDT D  +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 120 LVIFLRNRLKYALTGNEVLKIV 185
           L+ F+  RL++ LT  E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 424 HHPLPRPTYQSQRFHPVR 477
           H PLPRP  Q +   PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -3

Query: 233 SRVSPHFPINLYEALFHNFQDFVSGQSIL 147
           S++ P   I+LY  L+H+   +++ Q ++
Sbjct: 410 SKIDPRVVISLYPDLYHSELSYIAFQGVI 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,419
Number of Sequences: 5004
Number of extensions: 50985
Number of successful extensions: 143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)