Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00620X
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             162   1e-40
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         28   4.4  
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      28   4.4  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  162 bits (394), Expect = 1e-40
 Identities = 73/85 (85%), Positives = 78/85 (91%)
 Frame = +3

Query: 3   PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
           PKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KI
Sbjct: 429 PKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKI 488

Query: 183 VKQRLIKVDGKVRTDPTYAAGFMDL 257
           VKQRLIK+DGKVRTD TY AGFMD+
Sbjct: 489 VKQRLIKIDGKVRTDTTYPAGFMDV 513



 Score =  128 bits (310), Expect = 2e-30
 Identities = 57/89 (64%), Positives = 71/89 (79%)
 Frame = +2

Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRY 436
           V+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTH+ RTIRY
Sbjct: 514 VTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRY 573

Query: 437 PDPLIKVNDSIQLDIATTKIMDFINLSLG 523
           PDP IKVND++ +DI T K++D+I    G
Sbjct: 574 PDPNIKVNDTVVIDIKTGKVIDYIKFDTG 602


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 143 SEVCFDRKRSPENCE 187
           +E+C DRKR P++CE
Sbjct: 81  NELCHDRKRGPDDCE 95


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 320 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEG 421
           I  +TP+    K C+V R++TGP    +++  EG
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEG 320


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -1

Query: 211 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 95
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,843,366
Number of Sequences: 59808
Number of extensions: 397423
Number of successful extensions: 1017
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)