Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00620X
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   127   5e-30
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   3.9  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    27   9.0  
Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical p...    27   9.0  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  127 bits (307), Expect = 5e-30
 Identities = 60/95 (63%), Positives = 70/95 (73%)
 Frame = +3

Query: 3   PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 182
           PKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI
Sbjct: 4   PKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKI 63

Query: 183 VKQRLIKVDGKVRTDPTYAAGFMDLSQLRRLMNCF 287
           + QR+++VDGKVRT   +  GFMD+  + R    F
Sbjct: 64  LTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98



 Score =  111 bits (268), Expect = 2e-25
 Identities = 51/89 (57%), Positives = 64/89 (71%)
 Frame = +2

Query: 257 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEGRTIRY 436
           V+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T +GRTIRY
Sbjct: 89  VAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRY 148

Query: 437 PDPLIKVNDSIQLDIATTKIMDFINLSLG 523
           PDP +KVND+I  +I+T KI D +    G
Sbjct: 149 PDPHVKVNDTIVFNISTQKITDSVKFEPG 177



 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 508 QFESGNLCMITGGRN 552
           +FE GNL  +TGGRN
Sbjct: 173 KFEPGNLAYVTGGRN 187


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 308 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHEGRTIR-YP 439
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 424 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 507
           HH    PTY    F+P  H++Y+ + L+
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


>U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical
           protein T19D12.10 protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +2

Query: 242 WIYGFVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHEG 421
           ++YG V+   T   F    D      +HR    +   K+   K V +G K+VPYL   + 
Sbjct: 190 YLYGGVAFLVTTAFFAFFRDSA---QVHRNVSVKELEKISAGKTVTSGRKSVPYLAVCKN 246

Query: 422 RTI 430
           + I
Sbjct: 247 KVI 249


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 465  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 301
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 97  WGPVDGLGAYTPPSLSNIHALGAF 26
           +GP+ GLG +T P+L  +   G F
Sbjct: 75  FGPIPGLGNFTLPTLGTLPGFGNF 98


>Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical
           protein Y69H2.10a protein.
          Length = 572

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 97  WGPVDGLGAYTPPSLSNIHALGAF 26
           +GP+ GLG +T P+L  +   G F
Sbjct: 75  FGPIPGLGNFTLPTLGTLPGFGNF 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,019
Number of Sequences: 27780
Number of extensions: 290390
Number of successful extensions: 820
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)