Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00620X
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   0.89 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   3.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.3  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
 Frame = -1

Query: 457 DFDKWVWVADGAALMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQF 278
           D    +W+  G  LM +    + R G+  +  T L+ ++L    + CE  +NI    K +
Sbjct: 57  DVHVMIWIGFGF-LMTF----LRRYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSY 111

Query: 277 I---SLLN*DKSI-NPAA*VGSVLTFPSTFMRRCF 185
           +   SLL+ D ++  P   +G++L   +T+M+  F
Sbjct: 112 LSLRSLLSADVAVATPLISMGALLG-KTTYMQLVF 145


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 151 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 50
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 440 LGSGWCGPHALPSTEHS*VRSPH 372
           +G G    HA P   HS   +PH
Sbjct: 419 MGHGHSHIHATPHHHHSHAATPH 441


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 29  RSQSMDVGQTWRCVCTETVNRSPQVARVL 115
           +S++ DV ++WR +  E  NR+    R++
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDPRMI 289


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -1

Query: 346 SLLRGDTVDCESALNII 296
           SLL+ +TV C+ A++++
Sbjct: 381 SLLKENTVTCQEAMHML 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,300
Number of Sequences: 438
Number of extensions: 3616
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)