Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00619X
(336 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 67 6e-13
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 67 6e-13
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 63 1e-11
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 4.1
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 4.1
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 24 7.1
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 24 7.1
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 23 9.4
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 23 9.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 23 9.4
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 23 9.4
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 23 9.4
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 67.3 bits (157), Expect = 6e-13
Identities = 33/64 (51%), Positives = 47/64 (73%)
Frame = +1
Query: 64 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPEGPGLFAKALEGINVRDLST 243
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP +FAKALEG ++++L
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 244 NIGS 255
NIGS
Sbjct: 61 NIGS 64
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 67.3 bits (157), Expect = 6e-13
Identities = 33/64 (51%), Positives = 47/64 (73%)
Frame = +1
Query: 64 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPEGPGLFAKALEGINVRDLST 243
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP +FAKALEG ++++L
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 244 NIGS 255
NIGS
Sbjct: 61 NIGS 64
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 63.3 bits (147), Expect = 1e-11
Identities = 31/71 (43%), Positives = 47/71 (66%)
Frame = +1
Query: 64 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPEGPGLFAKALEGINVRDLST 243
+S +ELA Y+ALIL D+ + +T +K+ ++ KA V+VEP +FAKALEG ++++L
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60
Query: 244 NIGSEWVLRRP 276
NIGS P
Sbjct: 61 NIGSAGAASAP 71
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 24.6 bits (51), Expect = 4.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 28 GLRQLARSKLKMVSKAELACVYSAL 102
G+ QL + ++SKA+L C Y L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 24.6 bits (51), Expect = 4.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 220 INVRDLSTNIGSEWVLR 270
+N RD+ TN SEW+++
Sbjct: 208 LNERDILTNTNSEWLVK 224
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 23.8 bits (49), Expect = 7.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 235 GHGH*CLPRLWRTD 194
G+G CLP LWR D
Sbjct: 402 GNGVQCLPLLWRQD 415
>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 23.8 bits (49), Expect = 7.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 172 DVEPEGPGLFAKALEGINVRDLSTNI 249
D+EP GPGL +A E +STN+
Sbjct: 351 DLEPSGPGLQKRASE----TSMSTNV 372
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +1
Query: 100 LILVDDDVAVTGEKISTILKAAAVDVEPEG 189
LI + DD+ EK + D EP+G
Sbjct: 269 LIDLKDDITEEAEKCGRVTNVVLYDKEPDG 298
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 206 LANRPGPSGSTSTAAAFKMV 147
++NR GP ST TAA +++
Sbjct: 1 MSNRIGPQRSTKTAAKLRLL 20
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 23.4 bits (48), Expect = 9.4
Identities = 14/60 (23%), Positives = 24/60 (40%)
Frame = -2
Query: 242 VLRSRTLMPSKALANRPGPSGSTSTAAAFKMVEIFSPVTATSSSTRMRAE*THANSAFDT 63
++ + T + A P+GS+S + S VT+T + T S F+T
Sbjct: 758 IIPTETFGSTSGSATGTRPTGSSSQGSVVPTTSTGSSVTSTGTGTTTGVTEVTETSTFET 817
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 23.4 bits (48), Expect = 9.4
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +1
Query: 145 STILKAAAVDVEPEGPGLFAKALEGIN-VRDLSTNIG 252
ST+L VEPE G F ++G R+ N G
Sbjct: 34 STVLSGQVDFVEPEHKGFFQNLIDGFKPAREADGNGG 70
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 23.4 bits (48), Expect = 9.4
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 31 LRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVD 174
+R +A ++++ A + +LV+D V + G+ STI + A++
Sbjct: 1212 VRNMASKCFAAITESNAAGSKALHLLVEDVVPLLGDASSTIHRQGAIE 1259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,101,582
Number of Sequences: 5004
Number of extensions: 18890
Number of successful extensions: 54
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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