Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00619X
         (336 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   3e-18
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        34   0.033
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.71 
SB_50363| Best HMM Match : PHO4 (HMM E-Value=0)                        27   2.9  
SB_86| Best HMM Match : PGK (HMM E-Value=0)                            26   6.6  
SB_43947| Best HMM Match : efhand (HMM E-Value=2e-11)                  26   8.7  
SB_56728| Best HMM Match : rve (HMM E-Value=0.33)                      26   8.7  
SB_33643| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 41/65 (63%), Positives = 52/65 (80%)
 Frame = +1

Query: 61  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPEGPGLFAKALEGINVRDLS 240
           M S +ELACVYSALIL DDDVA+T +KI T++KAA ++VEP  PGLFAKAL+G N+ DL 
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 241 TNIGS 255
            + G+
Sbjct: 61  LSAGA 65


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 237 QVTDIDAFQGFGEQTWPLWLYIYSRRFQDGGNFLTSYGNIIIHQDESR 94
           Q+  I+ F+  G++ WP +  + S R + GG+ +      II  DESR
Sbjct: 103 QIVSIEMFEAVGQENWPTYFQMLSERLKQGGSAVLQ----IICIDESR 146


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 258  LRADVGAQVTDIDAFQGFGEQTWPLWLYIYSRRFQDGGNFLTSY 127
            L+ D+G +VT +      G  T   W+ +YS    D G+F T Y
Sbjct: 2097 LQVDLG-RVTRVTGIATQGSPTGDKWVKLYSVEQSDDGHFFTEY 2139


>SB_50363| Best HMM Match : PHO4 (HMM E-Value=0)
          Length = 608

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 64  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPEGPGLFAKALEGIN--VRDL 237
           V  AEL      +I  ++D+ V   +IS  ++AA   V+PE  G  +K   G+    R+L
Sbjct: 301 VDPAELLQRVEVIIEENEDLTVHIFEISDEVEAAEKSVDPEANGDTSKLSNGVTKPAREL 360

Query: 238 STNIGSEWVL 267
           +  +    +L
Sbjct: 361 NCQVSHHSIL 370


>SB_86| Best HMM Match : PGK (HMM E-Value=0)
          Length = 445

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 154 RWWKFSHQLRQHHH 113
           RWW++ H LRQ  H
Sbjct: 396 RWWRYRHVLRQMGH 409


>SB_43947| Best HMM Match : efhand (HMM E-Value=2e-11)
          Length = 482

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -2

Query: 245 LVLRSRTLMPSKALANRPGPSGSTSTAAAFKMVEIFSPVTATSSST 108
           L L  R + PSK     PG SG  S   +       SPV+   + T
Sbjct: 113 LTLPGRMVPPSKRKLKHPGSSGPASPLVSNMPTSSASPVSGMKNIT 158


>SB_56728| Best HMM Match : rve (HMM E-Value=0.33)
          Length = 255

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 124 AVTGEKISTILKAAAVDVEPEGPGLFAKALEGINVRDLSTNIGSEWVL 267
           A+TG  +++  KAA   +  +   + ++ L  I  RDLS  + S W++
Sbjct: 71  ALTGVDVASRYKAAR-SLRTKSTAVVSRELADIYQRDLSHGLKSSWLM 117


>SB_33643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +1

Query: 55  LKMVSKAELACVYSALILV 111
           L+M  KAE+A V+SAL+L+
Sbjct: 179 LRMEQKAEMALVFSALLLL 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,626,692
Number of Sequences: 59808
Number of extensions: 146081
Number of successful extensions: 946
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)