Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00619X
(336 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 66 4e-12
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 66 4e-12
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 66 5e-12
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 66 7e-12
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 66 7e-12
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 65 1e-11
At2g31160.1 68415.m03804 expressed protein contains Pfam profile... 31 0.19
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co... 29 0.77
At3g11430.1 68416.m01394 phospholipid/glycerol acyltransferase f... 27 4.1
At1g29120.2 68414.m03565 expressed protein 27 4.1
At1g29120.1 68414.m03564 expressed protein 27 4.1
At1g09575.1 68414.m01074 expressed protein contains Pfam domain,... 26 5.4
At3g08620.1 68416.m01001 KH domain-containing protein 26 7.2
At5g63980.1 68418.m08033 3'(2'),5'-bisphosphate nucleotidase / i... 25 9.5
At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor... 25 9.5
At5g41765.1 68418.m05085 hypothetical protein 25 9.5
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 66.5 bits (155), Expect = 4e-12
Identities = 31/65 (47%), Positives = 45/65 (69%)
Frame = +1
Query: 61 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPEGPGLFAKALEGINVRDLS 240
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E P LFAK E NV DL
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 241 TNIGS 255
N+G+
Sbjct: 61 MNVGA 65
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 66.5 bits (155), Expect = 4e-12
Identities = 31/65 (47%), Positives = 45/65 (69%)
Frame = +1
Query: 61 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPEGPGLFAKALEGINVRDLS 240
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E P LFAK E NV DL
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 241 TNIGS 255
N+G+
Sbjct: 61 MNVGA 65
>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
Length = 111
Score = 66.1 bits (154), Expect = 5e-12
Identities = 32/64 (50%), Positives = 43/64 (67%)
Frame = +1
Query: 64 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPEGPGLFAKALEGINVRDLST 243
+S +ELAC Y+ALIL DD + +T E IS ++K A V+VE P LFAK E N+ DL
Sbjct: 1 MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60
Query: 244 NIGS 255
N+G+
Sbjct: 61 NVGA 64
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 65.7 bits (153), Expect = 7e-12
Identities = 31/65 (47%), Positives = 44/65 (67%)
Frame = +1
Query: 61 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPEGPGLFAKALEGINVRDLS 240
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E P LFAK E NV DL
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 241 TNIGS 255
N+G+
Sbjct: 61 MNVGA 65
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 65.7 bits (153), Expect = 7e-12
Identities = 31/65 (47%), Positives = 44/65 (67%)
Frame = +1
Query: 61 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPEGPGLFAKALEGINVRDLS 240
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E P LFAK E NV DL
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 241 TNIGS 255
N+G+
Sbjct: 61 MNVGA 65
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 65.3 bits (152), Expect = 1e-11
Identities = 31/65 (47%), Positives = 44/65 (67%)
Frame = +1
Query: 61 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPEGPGLFAKALEGINVRDLS 240
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E P LFAK E NV DL
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60
Query: 241 TNIGS 255
N+G+
Sbjct: 61 MNVGA 65
>At2g31160.1 68415.m03804 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 219
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -2
Query: 236 RSRTLMPSKALANRPGPSGSTSTAAAFKMVEIFSPVTATSSSTRMRAE 93
++R + K RP PS STS+++A + F + TSS+T+++ E
Sbjct: 171 KARGVSYEKKKRKRPLPSSSTSSSSAVASHQQFQMLPGTSSTTQLKFE 218
>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
contains weak similarity to Swiss-Prot:52855 60S acidic
ribosomal protein P1 (L12) [Zea mays]
Length = 46
Score = 29.1 bits (62), Expect = 0.77
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 64 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPEGPGL 198
++ ELAC Y+AL+L D VT +ST++K A +++E P L
Sbjct: 1 MATGELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39
>At3g11430.1 68416.m01394 phospholipid/glycerol acyltransferase
family protein contains Pfam profile: PF01553
acyltransferase
Length = 502
Score = 26.6 bits (56), Expect = 4.1
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = -2
Query: 248 MLVLRSRTLMPSKALANRPGPSGSTSTAAAFKMVEIFSPVTATSSSTRMR----AE*THA 81
+ V RTLM L+ G S T + ++ EI SP+ T TR+R A+
Sbjct: 295 LFVCTHRTLMDPVVLSYVLGRSIPAVTYSISRLSEILSPI-PTVRLTRIRDVDAAKIKQQ 353
Query: 80 NSAFDTIFSFERASCRRP*LKREQA 6
S D + E +CR P L R A
Sbjct: 354 LSKGDLVVCPEGTTCREPFLLRFSA 378
>At1g29120.2 68414.m03565 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 40 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 183
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
>At1g29120.1 68414.m03564 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 40 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 183
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
>At1g09575.1 68414.m01074 expressed protein contains Pfam domain,
PF04678: Protein of unknown function, DUF607
Length = 292
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 249 DVGAQVTDIDAFQGFGEQTWPLWLYIYSRRFQDGGNFLTSYGNIIIHQDE 100
DV + T ++A QG G P ++++R D G L + +H D+
Sbjct: 78 DVVSYSTLLEASQGMGIARSPDEAHVFARVLDDAGVVLIFRDKVYLHPDK 127
>At3g08620.1 68416.m01001 KH domain-containing protein
Length = 283
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 239 LRSRTLMPSKALANRPGPSGSTS 171
LR L+ S N PGPSGS S
Sbjct: 247 LRELALLNSNLRENSPGPSGSVS 269
>At5g63980.1 68418.m08033 3'(2'),5'-bisphosphate nucleotidase /
inositol polyphosphate 1-phosphatase / FIERY1 protein
(FRY1) (SAL1) identical to SP|Q42546
3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)
(3'(2'),5- bisphosphonucleoside 3'(2')-phosphohydrolase)
(DPNPase) {Arabidopsis thaliana}; identical to cDNA
inositol polyphosphate 1-phosphatase FIERY1 (FRY1)
GI:15281147
Length = 353
Score = 25.4 bits (53), Expect = 9.5
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +1
Query: 31 LRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPEGPGLFAKA 210
L +A + S E+ C++ A I + + K S + K VE F ++
Sbjct: 172 LASIAGNNKNKSSSDEIGCLFFATIGSGTYMQLLDSKSSPV-KVQVSSVENPEEASFFES 230
Query: 211 LEGI-NVRDLSTNIGSEWVLRRPLV 282
EG ++ DLS++I ++ ++ P V
Sbjct: 231 FEGAHSLHDLSSSIANKLGVKAPPV 255
>At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative similar to SP|P161127 from Arabidopsis
thaliana, SP|P93162 from Glycine max, SP|O22436 from
Nicotiana tabacum; non-consensus AA donor splice site at
exon 1, TG acceptor splice site at exon 2
Length = 418
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 58 KMVSKAELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPEGPGLFAKALEGI 222
K+ EL+ + + + +VD + T +++ I KA V+ PGL AKA GI
Sbjct: 158 KVQKGEELSVIETKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 215
>At5g41765.1 68418.m05085 hypothetical protein
Length = 152
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 217 GINVRDLSTNIGSE 258
GIN +DLS++IGSE
Sbjct: 95 GINAKDLSSSIGSE 108
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,053,040
Number of Sequences: 28952
Number of extensions: 108694
Number of successful extensions: 260
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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