Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00618
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   2.2  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    27   2.2  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   2.9  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    26   5.1  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    25   6.7  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    25   6.7  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.8  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 153 FSIYLPPQAEGGDVKLPLLYY 215
           F+ Y+PP+  GGD+ +P  +Y
Sbjct: 20  FNGYVPPEQNGGDIVVPKDFY 40


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 269 RYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVS 370
           RY  + G IV+   ++PR +K +GD   +DF +S
Sbjct: 219 RYCLQRGFIVLPKSSTPRRIKENGD--VFDFEIS 250


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 258  LVSRGMQPNMV*LS*VLILRHVELRLMEMIHHG 356
            L+S  +QPN++ L+   +L+H+  R  + + HG
Sbjct: 1285 LISSALQPNLLELTISHMLQHIGQRAFQTLIHG 1317


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 508 GHSMGGHGALVSTLKNPGQYKSVSAFAPICNP 603
           GHSMGG+ + V  ++ P + + +   +P+  P
Sbjct: 178 GHSMGGYLSAVYAMQYPERVEKLLLVSPVAIP 209


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 293 IVVGPDTSPRGVKIDGDDSSWDFGVSA 373
           +++    S R + I G+D+ W  G+SA
Sbjct: 115 VILATGASARRLHITGEDTYWQAGISA 141


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 468 AFKIKSYNSTFK*L-PIL*LLFHGSFVASK*KPALTPKSHDESSP 337
           A + K+Y +  K L PIL  LF+GS+ +SK K  LT +      P
Sbjct: 98  ASRNKNYGTEKKPLNPILGELFYGSWDSSKGKVELTAEQVSHHGP 142


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 375 PALTPKSHDESSPSILTPRGEVSGPTTITPCSAAYLWKPD 256
           P L+        PSI++     S P++  P S++ L  PD
Sbjct: 120 PTLSTTDEQPKEPSIISISSSSSDPSSSPPPSSSLLKTPD 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,099
Number of Sequences: 5004
Number of extensions: 61807
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)