Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00618
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0129 + 41243686-41243853,41243936-41244053,41245485-412455... 65 4e-11
01_07_0130 + 41262652-41262798,41262958-41263056,41263155-412632... 64 6e-11
12_02_1237 + 27245411-27245842 32 0.42
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 32 0.42
01_03_0040 + 11888291-11888419,11888525-11888662,11888913-118890... 30 1.7
01_06_0311 - 28377414-28377623,28377758-28377856,28378116-283782... 29 2.3
04_01_0575 - 7454421-7455707 29 3.0
10_01_0202 + 2178297-2178406,2180725-2180980,2181838-2181912,218... 28 5.2
02_01_0314 + 2106976-2107658,2107792-2107931,2108367-2108636,210... 28 6.9
11_04_0296 + 15992285-15992385,15992792-15993011 27 9.1
05_07_0101 - 27690927-27691208,27691695-27692474 27 9.1
05_04_0019 + 17197271-17197445,17197937-17198067,17198129-171981... 27 9.1
>01_07_0129 +
41243686-41243853,41243936-41244053,41245485-41245532,
41245756-41245787
Length = 121
Score = 65.3 bits (152), Expect = 4e-11
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = +3
Query: 63 SLQLESSNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQ 242
+L+ S K+FGG+ + H S+ L C M FS++LPP LP+LY+LSGLTC+++
Sbjct: 13 ALEQMSRTKMFGGHNLRFRHHSATLGCPMTFSVFLPPSPAS---DLPVLYWLSGLTCNDE 69
Query: 243 NFIT 254
NF+T
Sbjct: 70 NFVT 73
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +2
Query: 257 SGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGV 367
+G QR AA HG+ +V PDTSPRG+ I+G+ SWDFGV
Sbjct: 75 AGAQRAAAAHGIALVAPDTSPRGLNIEGEADSWDFGV 111
>01_07_0130 +
41262652-41262798,41262958-41263056,41263155-41263220,
41264073-41264255
Length = 164
Score = 64.5 bits (150), Expect = 6e-11
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +1
Query: 505 YGHSMGGHGALVSTLKNPGQYKSVSAFAPICNPSACPW 618
+GHSMGGHGAL LKN +YKSVSAF+P+ NP CPW
Sbjct: 28 FGHSMGGHGALTIYLKNTDKYKSVSAFSPVVNPINCPW 65
>12_02_1237 + 27245411-27245842
Length = 143
Score = 31.9 bits (69), Expect = 0.42
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 350 SWDFGVSAGFYLDATNEPWNNN 415
++DFG+ AGF++ TN P+N +
Sbjct: 42 AYDFGIPAGFFVPGTNNPYNGD 63
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 31.9 bits (69), Expect = 0.42
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 350 SWDFGVSAGFYLDATNEPWNNNYRMGSYLN 439
SW +G+ G Y + N PW +N +++N
Sbjct: 1287 SWQYGLDQGLYSEGKNYPWFSNGSSNAFIN 1316
>01_03_0040 +
11888291-11888419,11888525-11888662,11888913-11889011,
11889171-11889557
Length = 250
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 484 RS**NWYYGHSMGGHGALVSTLKNPGQYKSVSAFAPICNPS 606
RS + YG SMGG AL+ +K+P + AP+C S
Sbjct: 5 RSKSRFLYGESMGGAVALLLHMKDPTFWDGAILVAPMCKIS 45
>01_06_0311 -
28377414-28377623,28377758-28377856,28378116-28378253,
28378697-28378827,28378920-28379066,28379164-28379293,
28379625-28379654,28380138-28380416
Length = 387
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 508 GHSMGGHGALVSTLKNPGQYKSVSAFAPICNPS 606
G SMGG AL LK P ++ V AP+C S
Sbjct: 209 GQSMGGAVALKVHLKQPKEWDGVLLVAPMCKIS 241
>04_01_0575 - 7454421-7455707
Length = 428
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 162 YLPPQAE-GGDVKLPLLYYLSGLTCSEQNFITNLVSRGMQPNMV 290
+LP A+ GGD LPLL YL+ LT ++ SR P +V
Sbjct: 50 HLPANADDGGDTPLPLLPYLAHLTGKHYMSFVSVRSRRHAPWIV 93
>10_01_0202 +
2178297-2178406,2180725-2180980,2181838-2181912,
2182386-2182436,2182598-2182724,2182806-2182952,
2183846-2183976,2184088-2184189,2184604-2184702,
2185117-2185182,2185218-2185448
Length = 464
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 496 NWYYGHSMGGHGALVSTLKNPGQYKSVSAFAPIC 597
++ +G SMGG AL K P ++ AP+C
Sbjct: 265 SFLFGQSMGGAVALKIHFKQPNEWDGAILVAPMC 298
>02_01_0314 +
2106976-2107658,2107792-2107931,2108367-2108636,
2109938-2110254
Length = 469
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 347 SSWDFGVSAGFYLDATNEPWN 409
SSWD V GF AT PW+
Sbjct: 297 SSWDNPVPGGFKFTATKAPWS 317
>11_04_0296 + 15992285-15992385,15992792-15993011
Length = 106
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +2
Query: 308 DTSPRGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMG 427
D PRG +I + G AG Y T EP +NYRMG
Sbjct: 32 DNRPRGGRICTTSNLVASGSIAGDY--GTGEPTAHNYRMG 69
>05_07_0101 - 27690927-27691208,27691695-27692474
Length = 353
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 372 ALTPKSHDESSPSILTPRGEVSGPTTITPC 283
A+T S E P + P+G +GP + PC
Sbjct: 3 AITAPSSIEHIPLVRCPKGANAGPQAVIPC 32
>05_04_0019 +
17197271-17197445,17197937-17198067,17198129-17198164,
17198196-17198333,17198503-17198601,17198750-17199124
Length = 317
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 505 YGHSMGGHGALVSTLKNPGQYKSVSAFAPIC 597
YG SMGG AL+ K+P + AP+C
Sbjct: 71 YGESMGGAVALLLHRKDPTFWDGAVLVAPMC 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,348,239
Number of Sequences: 37544
Number of extensions: 391962
Number of successful extensions: 838
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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