Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00618
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         29   2.3  
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_43322| Best HMM Match : Peptidase_S9 (HMM E-Value=0.032)            28   7.0  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 413  NYRMGSYLNVELYDLILKAFCNVVDP 490
            N++ GS  N +LYD   K+F +V DP
Sbjct: 1973 NFKFGSSKNAQLYDATCKSFGDVRDP 1998


>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1113

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 335  DGDDSSWDFGVSAGFYLDATNEPWNN--NYRMGSYLNVEL 448
            D D  +W    + G +  AT E  NN  +YR+G  + VEL
Sbjct: 1057 DNDRYNWQRPFTKGKFASATGEKINNPRDYRVGDIIGVEL 1096


>SB_43322| Best HMM Match : Peptidase_S9 (HMM E-Value=0.032)
          Length = 216

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 499 WYYGHSMGGHGALVSTLKNPGQYKSVSAFAP 591
           + +GHSMGG  A+++  + P  +K V   AP
Sbjct: 69  YLFGHSMGGLIAVLAAQRRPTFFKGVVLSAP 99


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 369  LTPKSHDESSPSILTPRGEVSGPTTITP 286
            +TPKS  E  P+ +TP   V+  TT+TP
Sbjct: 2571 ITPKS-TELPPTTMTPESTVTPATTMTP 2597


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,923,106
Number of Sequences: 59808
Number of extensions: 463776
Number of successful extensions: 977
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)