Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00618
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 237 HYKLDQTNNIEVVISHHPLLPE-GGDR*KNSFCI 139
           H  L++TNNI  +++  P+L E   DR +N   +
Sbjct: 259 HSILNRTNNIFELVTVEPILTERPSDRQRNEILL 292


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 311 TSPRGVKIDGDDSSWDFGVSAGFYLDATNEP 403
           T+P G +I+    + DFG  A F  +    P
Sbjct: 305 TAPLGAEIEPSTQTIDFGRPATFTCNVRGNP 335


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 467 PSKLNHIIQHSNNCPFCNYYSMV 399
           PS  +  +  S  CP+ +YYS +
Sbjct: 622 PSLNSTNVTLSTKCPYPSYYSYI 644


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,263
Number of Sequences: 438
Number of extensions: 4559
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)