Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00615X
(524 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 29 0.029
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 28 0.051
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 24 1.1
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 24 1.1
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 22 3.3
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 21 5.8
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 21 5.8
AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. 21 5.8
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 21 5.8
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 21 5.8
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 21 7.7
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 29.1 bits (62), Expect = 0.029
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -1
Query: 413 FGAKAPNLTGFGNIVFVLFSKIPSASLEVIAGIYATLINVFWQTIRHGLSLHERRLCLLG 234
FG + P L G ++ F I +++ +Y +N +W+ R S E L L G
Sbjct: 56 FGGE-PLLVGM-DLTIASFDAISEVNMDYTITMY---LNQYWKDERLAFSQEEEVLTLSG 110
Query: 233 DFERQSW 213
DF + W
Sbjct: 111 DFAEKIW 117
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 28.3 bits (60), Expect = 0.051
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 405 GPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKKEL 521
GP GP+ ++D + GV Y +I + +A W EL
Sbjct: 294 GPNSQGPSSVIDTNTGVDYFTQINRNGIA--CWDTNTEL 330
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 23.8 bits (49), Expect = 1.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 433 RMLGPVPSGPKHQILRASVTSYSYFSVRY 347
R P+P P H +L A+V S + RY
Sbjct: 76 RFRKPLPIEPWHGVLNATVLPNSCYQERY 104
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 23.8 bits (49), Expect = 1.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 433 RMLGPVPSGPKHQILRASVTSYSYFSVRY 347
R P+P P H +L A+V S + RY
Sbjct: 76 RFRKPLPIEPWHGVLNATVLPNSCYQERY 104
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 22.2 bits (45), Expect = 3.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 392 DLVLWPRRYRPQHPGRLL 445
D + W RY P P RLL
Sbjct: 4 DSIHWEARYLPAGPPRLL 21
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.4 bits (43), Expect = 5.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 325 MTSRLALGILLKSTNTMLPK 384
+T+ L + L+ STN LPK
Sbjct: 257 VTTVLTMTTLMSSTNAALPK 276
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.4 bits (43), Expect = 5.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 325 MTSRLALGILLKSTNTMLPK 384
+T+ L + L+ STN LPK
Sbjct: 257 VTTVLTMTTLMSSTNAALPK 276
>AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein.
Length = 200
Score = 21.4 bits (43), Expect = 5.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 434 QDVGAGTFGAKAPNLTGFGN 375
Q V A FGA + + GFG+
Sbjct: 105 QAVAAAAFGATSSMVPGFGS 124
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.4 bits (43), Expect = 5.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 325 MTSRLALGILLKSTNTMLPK 384
+T+ L + L+ STN LPK
Sbjct: 196 VTTVLTMTTLMSSTNAALPK 215
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 21.4 bits (43), Expect = 5.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 444 SKGVQYLNEIKDSVVAGFQWAAKKEL 521
SK V +LN++ VAGF+ A K +
Sbjct: 187 SKLVDFLNDLVAIGVAGFRVDAAKHM 212
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 21.0 bits (42), Expect = 7.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 428 VGAGTFGAKAPNLTGFGNIVFV 363
V AG GA+ P+ +GN V V
Sbjct: 903 VTAGVIGARKPHYDIWGNTVNV 924
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,042
Number of Sequences: 438
Number of extensions: 3593
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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