Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00614
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    24   1.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   1.9  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   4.4  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   5.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.6  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 540 YGAGYELPADLKTQTAFST 596
           YGAGY+L A  K  T  ST
Sbjct: 78  YGAGYDLAARRKNATREST 96


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 312 YLLSLVVALTDERKLFVHIELRGKPLILSRLVTVPSPQ*ST 190
           YL SL  +L    +LF H +   +P+ L     +PSP+ S+
Sbjct: 46  YLFSL--SLAQNNQLFTHHKAPIRPVALPPKREIPSPKRSS 84


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 308 KYPTGSPSYLWTTATLPVTSETTASKLLPSARGRSLSGALQTSP 439
           K P G+PS   T ++LP T  T+ S   P+   RS+  +  + P
Sbjct: 69  KSPQGAPSPSSTPSSLP-TQRTSTSN--PTYSSRSVMTSCSSVP 109


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 143 MYHLVKIPIDRGLVHHVDYWGEGTVTNLDKIRGFP 247
           +Y L+    D  + + V YW +    N   I G P
Sbjct: 256 LYELIDRKYDENVDYQVRYWLQKGAPNNKLILGIP 290


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 425 LQTSPGLSTRPKLVVAYGYS 484
           L  SPG  + P  V++ GYS
Sbjct: 117 LTPSPGPPSHPYTVISNGYS 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,658
Number of Sequences: 336
Number of extensions: 3352
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)