Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00614
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0302 - 22144271-22144543,22144946-22145083,22146004-221462...    29   2.8  
06_03_1056 + 27239176-27242361                                         29   4.9  
06_03_0190 - 17708513-17708548,17708897-17709295                       29   4.9  
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943...    29   4.9  
02_05_1113 + 34207997-34208380                                         29   4.9  
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045           28   6.5  

>09_06_0302 -
           22144271-22144543,22144946-22145083,22146004-22146278,
           22146486-22146957
          Length = 385

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
 Frame = +2

Query: 302 ESKYPTGSPSYL-WTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKLVVAYG 478
           E   P+G+ + L     + PV+   T S    S RG    G   ++P +     LVV YG
Sbjct: 260 ECLVPSGNETALKLAVLSQPVSVVITISDEFRSYRGGVFRGPCGSNPNVDNHVVLVVGYG 319

Query: 479 YSENSDDIQNSSVTWQKRLILWSRVRTARRLEDPDGI 589
            + ++        +W K    +  +R  R + + +GI
Sbjct: 320 VTTDNIKYWIIKNSWGKTWGEYGYIRMERDILNKNGI 356


>06_03_1056 + 27239176-27242361
          Length = 1061

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 205 APVIDMVYQPSVDRDLHEVVHTEVGYW 125
           A V D +   S+DR LH   HTE G W
Sbjct: 812 ALVFDFMPNYSLDRWLHRAKHTETGKW 838


>06_03_0190 - 17708513-17708548,17708897-17709295
          Length = 144

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 48  HRQRQNGQPPLSQTTTQMRPCCMRT 122
           HR+R  G PP   + +++RPC   T
Sbjct: 10  HRRRSRGPPPSRTSRSRLRPCLATT 34


>06_03_0105 +
           16693771-16693780,16693833-16693876,16694274-16694348,
           16694548-16694784,16694880-16695050,16695137-16695250
          Length = 216

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 361 NWKCRCRPQIRRGSCWVF 308
           N+ CRCRP+ RR   W +
Sbjct: 5   NYVCRCRPENRRNKGWAY 22


>02_05_1113 + 34207997-34208380
          Length = 127

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 542 WSRVRTARRLEDPDGIQHEDGLCRRNVNQQP 634
           W R RTARR    DG   E+G C R   + P
Sbjct: 45  WRRSRTARRTPVADGDGSEEGGCGRGRRRGP 75


>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
          Length = 1294

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 549  GYELPADLKTQTAFSTKMVFADATSINNHWYNLVTGGDYINAVQTVRIS 695
            G E   +L+T+++    +V  +   +N+   +L+  GDYI ++  +RIS
Sbjct: 928  GKECNENLETKSSRLLVVVVEECKCLNSLEESLLVQGDYIKSIHVLRIS 976


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,137,576
Number of Sequences: 37544
Number of extensions: 395516
Number of successful extensions: 1003
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)