Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00614
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.18 
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  33   0.18 
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              32   0.54 
SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    29   2.9  
SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)                     29   3.8  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_48245| Best HMM Match : efhand (HMM E-Value=0.086)                  28   6.6  
SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     28   8.8  

>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 314  PTGSPSYLWTTATLPVTSETTASKLLPSAR--GRSLSGALQTSPGLSTRPKLVVAYGYSE 487
            P G P      +    +SETT  KLLP  +  G S    L+ +P ++  P+L      SE
Sbjct: 1511 PEGKPGSPGQPSRQSASSETTNEKLLPGKQSPGASSDTELKGTPSVTNTPQLQGTSSASE 1570

Query: 488  NSDDIQNSSVT 520
            ++   Q+S  T
Sbjct: 1571 STQTQQSSQTT 1581


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +2

Query: 233  IRGFPRSSM*TNSLRSSVRATTRESKYPTGSPSYLWTTATLPVTSETTASKLLPSARGRS 412
            I G P S   +NS ++S  ATTR++  PT   SY   +   P T+ +T  +   +A+  +
Sbjct: 935  INGAPVSKT-SNSTQNSTEATTRKTGTPTSKTSYSKQSRAEPSTTYSTCQQ-ASTAQASA 992

Query: 413  LSGAL--QTSPG 442
            ++G++  +TS G
Sbjct: 993  INGSITSKTSTG 1004


>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 28/112 (25%), Positives = 46/112 (41%)
 Frame = +2

Query: 263 TNSLRSSVRATTRESKYPTGSPSYLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPG 442
           T +  ++   TT  +   T +P    TT T P T+    +   P+    + S    T+  
Sbjct: 27  TTAPTTNTALTTTTAPTTTTAP----TTTTAPTTTTAPTTTTTPN-NDYNTSDDYSTNND 81

Query: 443 LSTRPKLVVAYGYSENSDDIQNSSVTWQKRLILWSRVRTARRLEDPDGIQHE 598
            ST      +  YS N D      +  Q+RL    R++  RRL+    +QH+
Sbjct: 82  YSTNNDYSTSDEYSTNDDYNTKQRLQHQRRLQHQQRLQHQRRLQHQRRLQHK 133


>SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
 Frame = +2

Query: 284 VRATTRESKYPTGSPSYLWTTATLPVTSETTASKLLPSAR-GRSLSGALQTSPGLSTRPK 460
           V  T+R+    + S SY+ TTA   +  ++T  +L+   R GR           + T  K
Sbjct: 85  VYGTSRQGMQYSNSTSYMGTTAITCMAFDSTERRLISGGRDGRLRIWNYNNGHCIRTLEK 144

Query: 461 LVVAYGYSENSDDIQNSSVTWQKRLILWSRVRTARRLEDPDGIQH 595
            +   G  + +  I+    TW     +   VR  R  +D D   H
Sbjct: 145 GLSCMGRRDRACSIRIQPATWGHGYHVHG-VRLYREKDDTDDFHH 188


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = +2

Query: 341 TTATLPVTSETTASKLLPSARGRSLSGALQTSPGL-STRPKLVVAYGYSENSDDIQNSSV 517
           +T+++   + T AS L PS   RS S A    PGL ++ PKL      ++   D  ++  
Sbjct: 528 STSSVGQPTSTPASMLGPSPFDRSHSMA----PGLRASLPKLPTFKRRTQEQKDSNSTQE 583

Query: 518 TWQKRLILWSRVRTARRLEDPDGIQHED 601
               RL+ ++ +   RRL+D +     D
Sbjct: 584 KSDGRLLHFNHIPKRRRLQDSEAESEHD 611


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
 Frame = +2

Query: 233  IRGFPRSSM*TNSLRSSVRATTRESKYPTGSPSYLWTTATLPVTSETTASKLLPSARGRS 412
            +   P  S+  N   SSV  T   +  PT SPS   TT+++  T    A+  +  +   +
Sbjct: 725  VNATPTISLSPNGTTSSVYETIAVNATPTISPSPNGTTSSVYETIAVNATPSISLSTNET 784

Query: 413  LSG-----ALQTSPGLSTRPKLVVAYGYSENSDDIQNSSVTWQK 529
             S      A+ ++P +S  P    ++ Y   + +  ++SV   K
Sbjct: 785  ASSPYETIAVNSTPSISPSPNGTTSFMYETIAVNATSTSVRTSK 828


>SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 350 TLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKLVVAYGYSENS 493
           T P+T   T     P + GRS SGA+++S   S   K V A  +  +S
Sbjct: 295 TNPLTLRNTVDSSSPVSGGRSYSGAIKSSLSSSVNSKPVEATSHVADS 342


>SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)
          Length = 1105

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 287 RATTRESKYPTGSPSYLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPK 460
           +ATT  +   T +P  + T    P+TS  T++  +   R         ++ G STR K
Sbjct: 380 QATTTAATTSTAAPGNITTPTKGPITSNNTSTPTMSGGRKMPAKEPTTSTTGHSTRSK 437


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 278 SSVRATTRESKYPTGSPSYLWTTATLPVTS-ETTASKLLPSARGRSLSGALQTSPGLSTR 454
           S  R  T  +   T +P    TTA+L  T+ ETT + L  +A   + +  L T+P  +T 
Sbjct: 48  SEKRKKTTTASLATTAPET--TTASLVTTAPETTTASLATTAPETTTASFLTTAPEATTA 105

Query: 455 PKLVVA 472
           P+   A
Sbjct: 106 PETTTA 111


>SB_48245| Best HMM Match : efhand (HMM E-Value=0.086)
          Length = 285

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +2

Query: 227 DKIRGFPRSSM*TNSLRSSVRATTRESKYPTGSPSYLWTTATLPVTSETTASKLLPSARG 406
           +K++G    S+  N+L+ +   +T     PT SP Y  + A   + S   +S  LP A  
Sbjct: 63  NKLKGTEPPSVLPNTLKMTSLPSTFNRNQPTASPQYSPSGAPSGI-SNGFSSMTLPKACL 121

Query: 407 RSLSGALQTSPG 442
            ++SG +    G
Sbjct: 122 STMSGTMTLPKG 133


>SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1627

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 308 CFPSLWPLLTSANCSFTLSSEGSLLSCQG*SLFLRPSNR 192
           C+P+L  LL  +NC   +SS  S ++C   + +L   NR
Sbjct: 521 CYPALKKLLLDSNCFVEVSSLPSEVACNILTSWLSNDNR 559


>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 104 PHLCRSLAQRRLPILPLTVFLPVK 33
           P +CRS+     P +P++V+LP++
Sbjct: 118 PSICRSVYLSAYPSVPMSVYLPIR 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,812,548
Number of Sequences: 59808
Number of extensions: 443795
Number of successful extensions: 1148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)