Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00614
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL132904-6|CAD91706.2| 326|Caenorhabditis elegans Hypothetical ... 29 2.5
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom... 29 2.5
AC006656-5|AAL32227.1| 75|Caenorhabditis elegans Hypothetical ... 29 3.3
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle... 29 4.4
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 29 4.4
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 7.7
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 7.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 7.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 7.7
>Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical
protein C04A11.2 protein.
Length = 439
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +2
Query: 269 SLRSSVRATTRESKYPTGSPSYLWTTATLPVTSETTASKLLPSAR 403
S R+S RA + ++ PTG+P+ T PVT+ T++S + P+A+
Sbjct: 169 SARTSTRAASG-NRTPTGTPNM--TRNVRPVTNRTSSSNVSPAAQ 210
>AL132904-6|CAD91706.2| 326|Caenorhabditis elegans Hypothetical
protein Y111B2A.9b protein.
Length = 326
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 118 VLPNTLLRYVPPREDPDRQRAGTPCRLL 201
V P+ L+ PP DP QR+GTP LL
Sbjct: 4 VSPSNLVFPPPPSPDPYTQRSGTPSALL 31
>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
homolog) family protein 6 protein.
Length = 1186
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 356 PVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKLVVAYGYSENSDD 499
P S + K+L + +++S ++T S RPK+VV SE DD
Sbjct: 41 PKISNDSEKKVLKRSNSKTVSSPVKTPRNASKRPKVVVC-SSSEGEDD 87
>AC006656-5|AAL32227.1| 75|Caenorhabditis elegans Hypothetical
protein H12I13.6 protein.
Length = 75
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +2
Query: 329 SYLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKLVVAYGYSENSDDIQN 508
S + T A L + A K+ G + + PG+ RP + + Y EN D
Sbjct: 7 SVILTAAVLVNCGKFKAKKVEEEIGGSMMFAPRRPPPGVEARPTIPTSMVYMENDD---- 62
Query: 509 SSVTWQKR 532
++ TW++R
Sbjct: 63 ANSTWRQR 70
>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucleotide
exchange factorfor RAS protein.
Length = 1413
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +2
Query: 245 PRSSM*TNSLRSSVRATTRESKYPTGSPSYLWTTATLPVTSETTASKLLPSARG 406
PRSS S S+ TT+ P S + +TAT P T TT + PS+ G
Sbjct: 1276 PRSSRANQSNSVSLPPTTQAPMPPAPKSSGMMSTATSPTTLTTTTT---PSSAG 1326
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +2
Query: 245 PRSSM*TNSLRSSVRATTRESKYPTGSPSYLWTTATLPVTSETTASKLLPSARG 406
PRSS S S+ TT+ P S + +TAT P T TT + PS+ G
Sbjct: 1276 PRSSRANQSNSVSLPPTTQAPMPPAPKSSGMMSTATSPTTLTTTTT---PSSAG 1326
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = +2
Query: 263 TNSLRSSVRATTRESKYPTGSPSYLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPG 442
T + ++ TT + T +P+ TT T P T+ TTA + + T
Sbjct: 255 TTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTTSTPTT 314
Query: 443 LSTRPK 460
+T PK
Sbjct: 315 TTTTPK 320
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 278 SSVRATTRESKYPTGSPSYLWTTATLPVTSETTASKLLPSARGRSLS 418
S+ R +TR S T S T T+ + +T + + P +GRSLS
Sbjct: 2313 STPRGSTRSSNLTTSQDSQATTKMTVS-SEDTIEAPIAPPRKGRSLS 2358
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 278 SSVRATTRESKYPTGSPSYLWTTATLPVTSETTASKLLPSARGRSLS 418
S+ R +TR S T S T T+ + +T + + P +GRSLS
Sbjct: 2313 STPRGSTRSSNLTTSQDSQATTKMTVS-SEDTIEAPIAPPRKGRSLS 2358
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 278 SSVRATTRESKYPTGSPSYLWTTATLPVTSETTASKLLPSARGRSLS 418
S+ R +TR S T S T T+ + +T + + P +GRSLS
Sbjct: 2313 STPRGSTRSSNLTTSQDSQATTKMTVS-SEDTIEAPIAPPRKGRSLS 2358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,681,945
Number of Sequences: 27780
Number of extensions: 321106
Number of successful extensions: 866
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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