Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00614
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.7  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 247 SELNVNEQFALVSKGHNEGKQIP 315
           S +N+++  A V + + EGK+IP
Sbjct: 238 SNINISQVIACVGQQNVEGKRIP 260


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 190 MVYQPSVDRDLHEVVHTEV 134
           +VY+PS  R  HE+  T+V
Sbjct: 515 LVYEPSACRPRHEIRSTDV 533


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 131 PYFGMYH-LVKIPIDRGLVHHVDYWGEGTVTNLDKI 235
           P +  +H L++IP D    + +D W     + L+KI
Sbjct: 522 PKYDSHHKLIEIPEDLKYFYEIDNWMLDLNSGLNKI 557


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 131 PYFGMYH-LVKIPIDRGLVHHVDYWGEGTVTNLDKI 235
           P +  +H L++IP D    + +D W     + L+KI
Sbjct: 522 PKYDSHHKLIEIPEDLKYFYEIDNWMLDLNSGLNKI 557


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 344 TATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRP 457
           T TLP  S T      PSA   + +     + G +T P
Sbjct: 225 TTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIP 262



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 272 LRSSVRATTRESKYPTGSPSYLWTTATLPVTSETTASKLL 391
           L     +T+  +   T + +   TTAT   T+ TTA+ L+
Sbjct: 94  LHPPASSTSLPATITTTTTTTTTTTATAAATATTTATGLI 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,525
Number of Sequences: 438
Number of extensions: 3640
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)