Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00611
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    27   2.1  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    27   2.1  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.9  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    25   6.5  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    25   6.5  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = -1

Query: 235 LSCQG*SLFLLPSNRRGVAALYQSGSSQGGTYRSRVLGSTDTTGPHL----CRSLAQRRL 68
           LS    SL ++P N  GV+ LY       G Y   V+   D T   L     R L  R +
Sbjct: 661 LSSPANSLCIIPMNVNGVSTLYLHIGLMNGVYLRTVI---DVTSGQLLDTRTRFLGPRAV 717

Query: 67  PILPLTV 47
            I P+T+
Sbjct: 718 KIYPITM 724


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +1

Query: 286 RATIRESKYPTGSPSCLWTTATLPVTSGTTASKLLPSARGQSLSGALQTSPGS--STRPK 459
           R  + E+KYPT SP+   +  + P   GTTA+    SA   SL        G   S +  
Sbjct: 246 RRLLLEAKYPTVSPTNEPSAHSRPSPQGTTANS--SSASISSLHNTTPDGEGKYRSVQNG 303

Query: 460 LVVAYGYSDNSD 495
             + Y  S NSD
Sbjct: 304 RALNYVSSFNSD 315


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 19  TSSSPSQVKTXXXXXXXXXXXXDYDTNEDLLYPYSPTPYFG 141
           T++SP   ++            +YD+    +YPY P P+ G
Sbjct: 448 TANSPIAYQSYSVMPTYWSFPQNYDSTVPAVYPYMPPPFSG 488


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
 Frame = +1

Query: 277 SSVRATIRESKYPTGSPSCLWT--TATLPVTSGTTASKLLPSARGQSL---SGALQTSPG 441
           +S   T   S  PTG  S L T  T T+P TS ++ S  +P     S    S  L T+  
Sbjct: 168 TSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 227

Query: 442 SSTRPKLVVAYGYSDNSDDIQNPSV 516
           S T    +   G S  S  I  P+V
Sbjct: 228 SCTTSTSIPTGGSSSLSTPI-TPTV 251



 Score = 25.0 bits (52), Expect = 8.6
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
 Frame = +1

Query: 262 TNS--LRSSVRATIRESKYPTGSPSCLWT--TATLPVTSGTTASKLLPSARGQSLSGALQ 429
           TNS  L ++  +    +  PTG  S L T  T T+P TS ++ S  +P     S      
Sbjct: 217 TNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS 276

Query: 430 TSPGSSTRPKLVVAYGYSDNSDDIQNPSV 516
             P +ST      +   + NS     P+V
Sbjct: 277 PLPTTSTSCTTSTSIPPTGNSTTPVTPTV 305


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +1

Query: 331 CLWTTATLPVTSGTTASKLLPSARGQSLSGALQTSPGSSTRPKLVVAYGY 480
           C+W+       S T A   LP+    S S     S GSS R   V+   Y
Sbjct: 153 CVWSVPIGIFVSFTAADNTLPTITTPSSSSPDAYSSGSSRRTSNVLRQAY 202


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 371 VPDVTGSVAVVHRHDGDPVGYLLSLIVA 288
           +PD+TG VA+V    G  +GY+ +L +A
Sbjct: 37  IPDLTGKVALVTGSSGG-IGYVTALELA 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,673
Number of Sequences: 5004
Number of extensions: 51767
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)