Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00611
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1070 - 27351781-27351882,27352461-27352520,27353033-273531... 33 0.13
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943... 30 1.6
03_05_0756 + 27469002-27469107,27469200-27469369,27470210-274710... 29 2.2
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 29 3.8
03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353... 29 3.8
12_02_1119 + 26213719-26213955,26214039-26214197,26214640-262147... 28 5.0
12_01_0015 - 111666-111747,112043-112368,112500-112635,112772-11... 28 5.0
11_01_0015 - 115965-116076,116432-116757,116889-117024,117161-11... 28 5.0
03_02_0152 - 5951201-5951616,5952228-5952602,5955534-5955948 28 6.6
11_03_0128 - 10437407-10438049,10438097-10438272 27 8.7
07_01_0117 + 894314-896677 27 8.7
>06_03_1070 -
27351781-27351882,27352461-27352520,27353033-27353142,
27353583-27353693,27353781-27353939,27354035-27354158,
27354755-27354812,27356656-27356933
Length = 333
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +1
Query: 313 PTGSPSCLWTTATLPVTSGTTASKLLPSARGQSLSGALQTSPGSSTRPKLVVAYGYSDNS 492
P G C+ + T PV T AS ++PS S++ P S++R + A ++ S
Sbjct: 164 PLGEQGCVMSMDTSPVIRNTNASAVVPS-WDNSIA-----QPLSASRTQGTGAVATNNCS 217
Query: 493 DDIQNPSVTW 522
I++PS TW
Sbjct: 218 SSIESPSTTW 227
>06_03_0105 +
16693771-16693780,16693833-16693876,16694274-16694348,
16694548-16694784,16694880-16695050,16695137-16695250
Length = 216
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 360 NWKCRCRPQTRRGSCWVF 307
N+ CRCRP+ RR W +
Sbjct: 5 NYVCRCRPENRRNKGWAY 22
>03_05_0756 +
27469002-27469107,27469200-27469369,27470210-27471001,
27471182-27471398,27471972-27472150,27472592-27472833,
27473662-27474052
Length = 698
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 328 SCLWTTATLPVTSGTTASKLLPSARGQSLSGALQTSPGSSTRPKLVVAYGY-SDNSDDI 501
S +WT P +SG S L+P + ++ +++ GS+ +P L + + DN+ D+
Sbjct: 578 SAMWTGTETPESSGNYTSTLIPFSCSKNSPIPCESASGSN-QPSLGYIFSFGEDNNKDV 635
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 305 ANTQQDPRRVCGRQRHFQLHQGRQRQNCYHQHGANH 412
+N ++ PRR GR R GR R YHQH NH
Sbjct: 359 SNDKEGPRRGRGRGRG-----GRGRGRGYHQHNNNH 389
>03_05_1071 +
30133696-30133874,30134294-30135200,30135224-30135358,
30135545-30136553,30136699-30136703
Length = 744
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 355 PVTSGTTASKLLPSARGQSLSGALQTSPGSS 447
P +GT+A LLPS G + S ++Q + GS+
Sbjct: 303 PPAAGTSAGPLLPSGGGATGSASVQATGGSA 333
>12_02_1119 +
26213719-26213955,26214039-26214197,26214640-26214702,
26214813-26214902,26214984-26215106,26215344-26215431,
26217043-26217117,26218109-26218215
Length = 313
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +1
Query: 295 IRESKYPTGSPSCLWTTATLPVTSGTTASKLLPSARGQSLSGALQT----SPGSSTRPKL 462
+ +S + G+P T T V SG + +PS G+ + GA+QT + G+S P L
Sbjct: 204 VGQSCFAIGNPYGYEHTLTTGVVSGL--GREIPSPNGRPIRGAIQTDAAINSGNSGGP-L 260
Query: 463 VVAYGY 480
+ +YG+
Sbjct: 261 IDSYGH 266
>12_01_0015 -
111666-111747,112043-112368,112500-112635,112772-112955,
113067-113135,113703-113829,115810-116051,116125-116279,
116751-116822,116908-116976,117058-117129,117217-117349,
117439-117944,118033-118567,118753-118819
Length = 924
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 401 RADGNSFDAVVPDVTG--SVAVVHRHDGDPVGYLLSLIVALTDERKLF 264
+ DGNSF +PD TG + +H D G L + L + ++ F
Sbjct: 439 KLDGNSFTGQIPDFTGCHDLQYIHLEDNQLTGALPPSLGELPNLKEFF 486
>11_01_0015 -
115965-116076,116432-116757,116889-117024,117161-117344,
117455-117523,118091-118217,120028-120269,120343-120497,
120969-121040,121126-121194,121276-121347,121435-121567,
121661-122166,122255-122789,122943-123018
Length = 937
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 401 RADGNSFDAVVPDVTG--SVAVVHRHDGDPVGYLLSLIVALTDERKLF 264
+ DGNSF +PD TG + +H D G L + L + ++ F
Sbjct: 442 KLDGNSFTGQIPDFTGCHDLQYIHLEDNQLTGALPPSLGELPNLKEFF 489
>03_02_0152 - 5951201-5951616,5952228-5952602,5955534-5955948
Length = 401
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 277 SSVRATIRESKYPTGSPSCLWTTATLPVTSGTTASKL--LPSARGQSLSGALQTSPGSST 450
SSV A + P+ PS L+ T++LP + A+K + + SG + P ++
Sbjct: 59 SSVAAILAAPTEPSAPPSGLFRTSSLPTVAAAEAAKKQGVDELNCRRPSGGAEAEPAAAR 118
Query: 451 RP 456
P
Sbjct: 119 LP 120
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +2
Query: 47 HRQRKNGKPPLSQTT-----TQMRTCCIRTPQHPTSVCTTL*RSRLVEGCYTTSITGEKE 211
HR R+ P S++T T RTCC TP + TS C T R SIT ++
Sbjct: 121 HRARQRHLPRRSRSTASTSSTTCRTCCRATP-NSTSPCKTGSRCSSSTTARRISITSPRK 179
Query: 212 K 214
+
Sbjct: 180 R 180
>07_01_0117 + 894314-896677
Length = 787
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Frame = -2
Query: 375 CRP*CNWKCRCRP--QTRRGSCWV 310
C P CNW + +P Q G CWV
Sbjct: 499 CSPLCNWVFKLQPSWQLLPGPCWV 522
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,867,074
Number of Sequences: 37544
Number of extensions: 372028
Number of successful extensions: 995
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -