Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00611
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    29   1.9  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    29   2.6  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z48585-1|CAA88486.1|  154|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    28   5.9  
AC024809-1|AAF59542.4|  519|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
           homolog) family protein 6 protein.
          Length = 1186

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 355 PVTSGTTASKLLPSARGQSLSGALQTSPGSSTRPKLVVAYGYSDNSDD 498
           P  S  +  K+L  +  +++S  ++T   +S RPK+VV        DD
Sbjct: 41  PKISNDSEKKVLKRSNSKTVSSPVKTPRNASKRPKVVVCSSSEGEDDD 88


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
 Frame = +1

Query: 262 TNSLRSSVRATIRESKYPTG-SPSCLWTTATL-PVTS--GTTASKLLPSARGQS--LSGA 423
           T+S  SS   T   S   T  SPS   TT+T  P TS  G ++S   PS+   S   S A
Sbjct: 463 TSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTA 522

Query: 424 LQTSPGSSTRPKLVVAYGYSDNSDDIQNP 510
             T   +ST+         +  S D  NP
Sbjct: 523 SSTQSSTSTQQSSTTTKSETTTSSDGTNP 551


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
 Frame = +1

Query: 262 TNSLRSSVRATIRESKYPTG-SPSCLWTTATL-PVTS--GTTASKLLPSARGQS--LSGA 423
           T+S  SS   T   S   T  SPS   TT+T  P TS  G ++S   PS+   S   S A
Sbjct: 463 TSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTA 522

Query: 424 LQTSPGSSTRPKLVVAYGYSDNSDDIQNP 510
             T   +ST+         +  S D  NP
Sbjct: 523 SSTQSSTSTQQSSTTTKSETTTSSDGTNP 551


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = +1

Query: 262  TNSLRSSVRATIRESKYPTGSPSCLWTTATLPVTSGTTASKLLPSARGQSLSGALQTSPG 441
            ++S++    ++   S   + SP    ++ ++P ++G T+S    +  G S  GA QTS  
Sbjct: 1487 SSSIQPIASSSTMGSTAGSSSPQPTVSSTSVPSSTGATSSGSSTTV-GSSTVGATQTSVS 1545

Query: 442  SSTRP 456
            SST P
Sbjct: 1546 SSTVP 1550


>Z48585-1|CAA88486.1|  154|Caenorhabditis elegans Hypothetical
           protein ZK673.1 protein.
          Length = 154

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 340 TTATLPVTSGTTASKLLPSARGQSLSGALQTSPGSST 450
           TTA    T GTTA+    +  G ++SGA   + G++T
Sbjct: 27  TTAATTATGGTTATGGTTATGGTTVSGATTAASGATT 63


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +1

Query: 265  NSLRSSVRATIRESKYPTGSPSCLWTTATLPVTSGTTASKLLPSARGQSLSGALQTSPGS 444
            +SLRS+  +      +P  + S     ATLP T+ +  S++  S+   S S +  +SP +
Sbjct: 1375 SSLRSTSNSH-HHHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGTSSPAA 1433

Query: 445  ST 450
            ++
Sbjct: 1434 TS 1435


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +1

Query: 265  NSLRSSVRATIRESKYPTGSPSCLWTTATLPVTSGTTASKLLPSARGQSLSGALQTSPGS 444
            +SLRS+  +      +P  + S     ATLP T+ +  S++  S+   S S +  +SP +
Sbjct: 1375 SSLRSTSNSH-HHHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGTSSPAA 1433

Query: 445  ST 450
            ++
Sbjct: 1434 TS 1435


>AC024809-1|AAF59542.4|  519|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.7a protein.
          Length = 519

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 325 GILLGICFPLLWPLLTSANCSFTFSFEG 242
           GI   I FP LWP L + + + + SF G
Sbjct: 59  GIQFSIFFPTLWPFLNTVDPTASASFFG 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,886,329
Number of Sequences: 27780
Number of extensions: 299770
Number of successful extensions: 817
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)