Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00611
(607 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15690.2 68416.m01989 biotin carboxyl carrier protein of acet... 32 0.26
At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-contain... 31 0.45
At4g18370.1 68417.m02724 protease HhoA, chloroplast (SPPA) (HHOA... 31 0.78
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 28 4.2
At1g54510.1 68414.m06217 protein kinase family protein contains ... 28 5.5
At4g18250.1 68417.m02710 receptor serine/threonine kinase, putat... 27 7.3
At1g79600.1 68414.m09281 ABC1 family protein contains Pfam domai... 27 7.3
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 27 9.6
At4g36970.1 68417.m05239 remorin family protein contains Pfam do... 27 9.6
At4g20170.1 68417.m02950 expressed protein 27 9.6
At2g23190.1 68415.m02770 cytochrome P450, putative Similar to C... 27 9.6
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 27 9.6
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 27 9.6
>At3g15690.2 68416.m01989 biotin carboxyl carrier protein of
acetyl-CoA carboxylase-related contains weak similarity
to Biotin carboxyl carrier protein of acetyl-CoA
carboxylase, chloroplast precursor (BCCP)
(Swiss-Prot:Q42533) [Arabidopsis thaliana]
Length = 263
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = -3
Query: 365 DVTGSVAVVHRHDGDPVGY---LLSLIVALTDERKL 267
DVTG V + R DG+PVGY L+S++ + +KL
Sbjct: 227 DVTGEVVKILREDGEPVGYNDALISILPSFPGIKKL 262
>At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-containing
protein similar to SP|Q06881 Biotin carboxyl carrier
protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.};
contains Pfam profile PF00364: Biotin-requiring enzyme
Length = 274
Score = 31.5 bits (68), Expect = 0.45
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 374 VVPDVTGSVAVVHRHDGDPVGYLLSLIVAL 285
V DV+G + + R DG+PVGY +LI L
Sbjct: 235 VESDVSGEIVKILREDGEPVGYNDALITVL 264
>At4g18370.1 68417.m02724 protease HhoA, chloroplast (SPPA) (HHOA)
identical to SP|Q9SEL7 Protease HhoA, chloroplast
precursor (EC 3.4.21.-) {Arabidopsis thaliana}
Length = 323
Score = 30.7 bits (66), Expect = 0.78
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Frame = +1
Query: 295 IRESKYPTGSPSCLWTTATLPVTSGTTASKLLPSARGQSLSGALQT----SPGSSTRPKL 462
+ +S + G+P T T+ V SG + +PS G+S+S A+QT + G+S P L
Sbjct: 214 VGQSCFAIGNPYGYENTLTIGVVSGL--GREIPSPNGKSISEAIQTDADINSGNSGGP-L 270
Query: 463 VVAYGYS 483
+ +YG++
Sbjct: 271 LDSYGHT 277
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 94 TNEDLLYPYSPTPYFGMYHLVKIPIGRG 177
T EDL+ P+S FG VKIP+G+G
Sbjct: 339 TEEDLMQPFSD---FGEVVSVKIPVGKG 363
>At1g54510.1 68414.m06217 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 612
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 355 PVTSGTTASKLLPSARGQSL 414
PV+ G T SK++PSAR SL
Sbjct: 388 PVSGGGTTSKIIPSARRTSL 407
>At4g18250.1 68417.m02710 receptor serine/threonine kinase, putative
similar to to receptor serine/threonine kinase PR5K
gi|1235680|gb|AAC49208
Length = 853
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 193 RRGVAALYQSGSSQGGTYRSRVLGSTDTTGPHLC 92
RRG A Q+ SS G +R L S D+TG C
Sbjct: 43 RRGEARALQAPSSWYGLISARTLCSIDSTGTFSC 76
>At1g79600.1 68414.m09281 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 711
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 433 SPGSSTRPKLVVAYGYSDNSDDIQ 504
SP S+RP VV Y +D +DD+Q
Sbjct: 58 SPSPSSRPASVVQYRRADLADDLQ 81
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 277 SSVRATIRESKYPTGSPSCLWTTATLPVTSG 369
SS +++ S P S SC+WT P SG
Sbjct: 40 SSSPSSLSPSSVPPPSSSCIWTHQVFPSFSG 70
>At4g36970.1 68417.m05239 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 427
Score = 27.1 bits (57), Expect = 9.6
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +1
Query: 337 WTTATLPVTSGTTASKLLPSARGQSLSGALQTSPGSSTRPKLVVAYGYSDNSDDIQNPSV 516
W++ +P S TT+S + R S + T+P S R + + D I +P
Sbjct: 28 WSSERVPHPSSTTSSSAINGGRRHIGSSSALTTPFYSGR---AIPSKWEDAERWICSPVS 84
Query: 517 TW*KGLILWSRVRTARR 567
T+ +G+ L S V + +R
Sbjct: 85 TYPQGVCLNSSVSSEQR 101
>At4g20170.1 68417.m02950 expressed protein
Length = 504
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 389 NSFDAVVPDVTGSVAVVHRHDGDPVGYLLSLIVALTDERK 270
+S AV P +G ++H GDP L I LT+ K
Sbjct: 186 SSISAVNPQNSGGTLILHATTGDPTLNLTDSISVLTEPPK 225
>At2g23190.1 68415.m02770 cytochrome P450, putative Similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis thaliana];
Length = 543
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 115 PYSPTPYFGMYHLVKIPIGRGLLHHVDYWGEGKVTNL 225
P P P+ G HL+K P+ R L G+ + +L
Sbjct: 79 PARPLPFIGHLHLLKQPLHRTFLSFSQSLGDAPIFSL 115
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 94 TNEDLLYPYSPTPYFGMYHLVKIPIGRG 177
T+EDL P+S FG VKIP+G+G
Sbjct: 318 TDEDLKQPFSE---FGEIVSVKIPVGKG 342
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 429 DVARIVNASEARRCLRIF*QF*RHSKSERDLVKRAYTMEPGTNCPQT 569
DVAR V C I +F +H K +K+ ++P T P T
Sbjct: 231 DVARKVKEMYCYTCSDIVKEFNKHDKEPAKYIKQWKGVKPKTGAPYT 277
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,226,599
Number of Sequences: 28952
Number of extensions: 285670
Number of successful extensions: 829
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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