Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00610
         (602 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   0.65 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   2.0  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   3.5  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   4.6  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   4.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   4.6  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   4.6  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   6.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   8.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.0  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 430 LQPSPGLSTRPKLVVAYGYS 489
           L PSPG  + P  V++ GYS
Sbjct: 117 LTPSPGPPSHPYTVISNGYS 136


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 317 YLLSLVVALTDERKLFVHIVARGKPLILSRLVTFPSPQ*ST 195
           YL SL  +L    +LF H  A  +P+ L      PSP+ S+
Sbjct: 46  YLFSL--SLAQNNQLFTHHKAPIRPVALPPKREIPSPKRSS 84


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 421 SGALQPSPGLSTRPKLVVAYGYSENSD 501
           S  LQP+ G       + AYGY    D
Sbjct: 57  SAGLQPTTGYYPYDPALAAYGYGAGYD 83



 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 545 YGTGYELPADLKTQTAFNT 601
           YG GY+L A  K  T  +T
Sbjct: 78  YGAGYDLAARRKNATREST 96


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 369 CNWKCRCRPQTRRGSCWVFAFPRCGP 292
           CN K  C+ ++   SC V   P   P
Sbjct: 135 CNGKPDCKDESDENSCTVETDPNRAP 160


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 148 MYHLVKIPIDRGLVHHVDYWGEGKVTNLDKIRGFP 252
           +Y L+    D  + + V YW +    N   I G P
Sbjct: 256 LYELIDRKYDENVDYQVRYWLQKGAPNNKLILGIP 290


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 313 KYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQPS 441
           K P G+PS   T ++LP T  T+ S    S+R    S +  P+
Sbjct: 69  KSPQGAPSPSSTPSSLP-TQRTSTSNPTYSSRSVMTSCSSVPT 110


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 406 RGRSLSGALQPSPGLSTRPKLV 471
           +GR +S  + P  GLST+PK++
Sbjct: 51  QGR-ISSLILPIYGLSTKPKIM 71


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 16/66 (24%), Positives = 25/66 (37%)
 Frame = +1

Query: 250 PRATM*TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGA 429
           P  T  T     + + TT+ S  PT  P  +      P  +   A+     + G +L G 
Sbjct: 162 PPTTSTTTRTTLTTKFTTKPSTKPTNKPVVVTKPPQAPPFATVGANLQATVSFGTNLVGG 221

Query: 430 LQPSPG 447
           +  S G
Sbjct: 222 IVRSLG 227


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 394 LPSARGR-SLSGALQPSPGLSTRP 462
           LPS   R S +G + P PGLS  P
Sbjct: 217 LPSDFYRFSPTGLIPPHPGLSPHP 240


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 394 LPSARGR-SLSGALQPSPGLSTRP 462
           LPS   R S +G + P PGLS  P
Sbjct: 109 LPSDFYRFSPTGLIPPHPGLSPHP 132


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 164 FTRWYIPK*GIGEYA 120
           F+ W I + GIG YA
Sbjct: 28  FSNWAIYRPGIGRYA 42


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 506 MSSEFSEYP*ATTSFGRVDNPGDGCSAPL 420
           M+S  +  P ATTS G   +     SAPL
Sbjct: 27  MTSPAAAPPPATTSSGSPASVASNASAPL 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.132    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,944
Number of Sequences: 336
Number of extensions: 3050
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)