Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00610
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.23 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   0.40 
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   2.1  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   2.1  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   4.9  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    25   6.4  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 283 SSVRATTRESKYPTGSPSCLWT--TATLPVTSETTASKLLPSARGRSLSGALQPSPGLST 456
           +S   TT  S  PTG  S L T  T T+P TS ++ S  +P     S      P P  ST
Sbjct: 111 TSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTST 170



 Score = 30.3 bits (65), Expect = 0.23
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 283 SSVRATTRESKYPTGSPSCLWT--TATLPVTSETTASKLLPSARGRSLSGALQPSPGLST 456
           +S   TT  S  PTG  S L T  T T+P TS ++ S  +P     S      P P  ST
Sbjct: 168 TSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 227



 Score = 29.9 bits (64), Expect = 0.30
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = +1

Query: 283 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQPSPGLST 456
           +S   TT  S  PTG+ S    T T+P TS ++ S   P A   S   +  P P  ST
Sbjct: 281 TSTSCTTSTSIPPTGN-STTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTST 337



 Score = 29.1 bits (62), Expect = 0.52
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +1

Query: 268 TNS--LRSSVRATTRESKYPTGSPSCLWT--TATLPVTSETTASKLLPSARGRSLSGALQ 435
           TNS  L ++  + T  +  PTG  S L T  T T+P TS ++ S  +P     S      
Sbjct: 217 TNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS 276

Query: 436 PSPGLST 456
           P P  ST
Sbjct: 277 PLPTTST 283



 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 283 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQPSPGLST 456
           S+    T  S  PT S SC  +T+     S + ++ + P+    S S    P P  ST
Sbjct: 211 STSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST 268


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 17/62 (27%), Positives = 34/62 (54%)
 Frame = +1

Query: 268 TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQPSPG 447
           ++S  SS  +++  S   + S S   +++++P+TS T++S    S+   S S + +PS  
Sbjct: 178 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSS 237

Query: 448 LS 453
            S
Sbjct: 238 SS 239


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 91  DYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHHVDYWG 210
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAG 350


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 91  DYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHHVDYWG 210
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAG 350


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 179 LSIGIFTRWYIPK*GIGEYAYNR 111
           LSI  F +WY+    I E+ Y R
Sbjct: 13  LSISFFLQWYLANTWIAEFLYRR 35


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 279 QTVRSHCSSREASYL-VKVSHFSFSPVIDMVYQPS 178
           Q++    SSR+ + L V  S   FSPV + VY PS
Sbjct: 124 QSIYDFSSSRQINALNVGQSSSPFSPVSEKVYDPS 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,338
Number of Sequences: 5004
Number of extensions: 48769
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)