SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00610
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0302 - 22144271-22144543,22144946-22145083,22146004-221462...    32   0.30 
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943...    30   1.6  
07_01_0866 - 7195305-7195756,7197171-7197447                           29   3.7  
05_03_0372 + 13181649-13182321,13183149-13183213                       29   3.7  
06_03_1056 + 27239176-27242361                                         28   5.0  
02_05_0074 - 25608689-25609138                                         28   5.0  
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497...    28   6.5  
01_07_0163 + 41578264-41578469,41578537-41579422                       27   8.7  

>09_06_0302 -
           22144271-22144543,22144946-22145083,22146004-22146278,
           22146486-22146957
          Length = 385

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
 Frame = +1

Query: 307 ESKYPTGSPSCL-WTTATLPVTSETTASKLLPSARGRSLSGALQPSPGLSTRPKLVVAYG 483
           E   P+G+ + L     + PV+   T S    S RG    G    +P +     LVV YG
Sbjct: 260 ECLVPSGNETALKLAVLSQPVSVVITISDEFRSYRGGVFRGPCGSNPNVDNHVVLVVGYG 319

Query: 484 YSENSDDIQISSVTWQKRLILWNRVRTARRLEDPDGI 594
            + ++    I   +W K    +  +R  R + + +GI
Sbjct: 320 VTTDNIKYWIIKNSWGKTWGEYGYIRMERDILNKNGI 356


>06_03_0105 +
           16693771-16693780,16693833-16693876,16694274-16694348,
           16694548-16694784,16694880-16695050,16695137-16695250
          Length = 216

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 366 NWKCRCRPQTRRGSCWVF 313
           N+ CRCRP+ RR   W +
Sbjct: 5   NYVCRCRPENRRNKGWAY 22


>07_01_0866 - 7195305-7195756,7197171-7197447
          Length = 242

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 25/88 (28%), Positives = 39/88 (44%)
 Frame = +1

Query: 274 SLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQPSPGLS 453
           S R++  A  R  + P   P     TA L + +      LLP     +   A    P  +
Sbjct: 41  SARAASTAWNRCMRRPCRCPQS--ATALLHLLA-VALLHLLPHQGEEAPLAAAAADPAPA 97

Query: 454 TRPKLVVAYGYSENSDDIQISSVTWQKR 537
           TR ++V+  GY +  DD+ +  VT+ KR
Sbjct: 98  TRREVVLCIGYDD--DDLALVDVTYPKR 123


>05_03_0372 + 13181649-13182321,13183149-13183213
          Length = 245

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +3

Query: 369 IRDDSVKTVTISTGPITKRCAAAVARIVNASEARRCLRIF*K 494
           +R D++    IS  PI K+C +A+ ++ N S A  CL+IF K
Sbjct: 128 LRMDALNRPGIS--PI-KKCTSAIRQLGNGSPAVECLKIFVK 166


>06_03_1056 + 27239176-27242361
          Length = 1061

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 204 VIDMVYQPSVDRDLHEVVHTEVGYW 130
           V D +   S+DR LH   HTE G W
Sbjct: 814 VFDFMPNYSLDRWLHRAKHTETGKW 838


>02_05_0074 - 25608689-25609138
          Length = 149

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 346 TTATLPVTSETTASKLLPSARGRSLSGALQPSP 444
           TTA L   S +T+S LLPSA   + +  L P P
Sbjct: 4   TTAALAPPSTSTSSVLLPSAAAAAAARCLGPLP 36


>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
            18449864-18449959,18452287-18452447,18452669-18452790,
            18452872-18453239,18453653-18453739,18453835-18453969,
            18454349-18454471,18454771-18454854,18455023-18455187,
            18455310-18455486,18455660-18455773,18455912-18456016,
            18457056-18457174,18457244-18457385,18457461-18457555,
            18457757-18457862,18458125-18458204,18458285-18458461,
            18459828-18459912,18460024-18460104,18460208-18460351,
            18460468-18460563,18460654-18460854,18461462-18461895,
            18462417-18462478,18462622-18462872,18462956-18463030,
            18463110-18463300,18463696-18463867,18463956-18464020,
            18464646-18464778,18464861-18464962,18465047-18465130,
            18465656-18465730,18465818-18465877,18465967-18466223,
            18466560-18466608,18466781-18466941,18467013-18467079,
            18467174-18467299,18467422-18467592,18468566-18468769,
            18469059-18469165,18469608-18469737,18469774-18469959,
            18470704-18470742
          Length = 2202

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 351  CRPQTRRGSCWVFAFPRCG-PY*RAQ 277
            CR  T +G  W  A P+CG PY R Q
Sbjct: 2096 CRDSTLQGQEWRCAVPQCGQPYHREQ 2121


>01_07_0163 + 41578264-41578469,41578537-41579422
          Length = 363

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 325 GSPSCLWTTA--TLPVTSETTASKLLPSARGRSLSGALQPSPGLSTRPKLVVAYGYSENS 498
           GSP  +W  A  ++P +S    S L    R  +   +L PSP +     LV+    + ++
Sbjct: 175 GSPLNMWPLAASSIPSSSSLVGSVLTYGNRSFASMFSLLPSPAVYGDTPLVITRAKNYSA 234

Query: 499 DDI 507
           DD+
Sbjct: 235 DDM 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.132    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,862,037
Number of Sequences: 37544
Number of extensions: 355939
Number of successful extensions: 883
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -