Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00610
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0302 - 22144271-22144543,22144946-22145083,22146004-221462... 32 0.30
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943... 30 1.6
07_01_0866 - 7195305-7195756,7197171-7197447 29 3.7
05_03_0372 + 13181649-13182321,13183149-13183213 29 3.7
06_03_1056 + 27239176-27242361 28 5.0
02_05_0074 - 25608689-25609138 28 5.0
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 28 6.5
01_07_0163 + 41578264-41578469,41578537-41579422 27 8.7
>09_06_0302 -
22144271-22144543,22144946-22145083,22146004-22146278,
22146486-22146957
Length = 385
Score = 32.3 bits (70), Expect = 0.30
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = +1
Query: 307 ESKYPTGSPSCL-WTTATLPVTSETTASKLLPSARGRSLSGALQPSPGLSTRPKLVVAYG 483
E P+G+ + L + PV+ T S S RG G +P + LVV YG
Sbjct: 260 ECLVPSGNETALKLAVLSQPVSVVITISDEFRSYRGGVFRGPCGSNPNVDNHVVLVVGYG 319
Query: 484 YSENSDDIQISSVTWQKRLILWNRVRTARRLEDPDGI 594
+ ++ I +W K + +R R + + +GI
Sbjct: 320 VTTDNIKYWIIKNSWGKTWGEYGYIRMERDILNKNGI 356
>06_03_0105 +
16693771-16693780,16693833-16693876,16694274-16694348,
16694548-16694784,16694880-16695050,16695137-16695250
Length = 216
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 366 NWKCRCRPQTRRGSCWVF 313
N+ CRCRP+ RR W +
Sbjct: 5 NYVCRCRPENRRNKGWAY 22
>07_01_0866 - 7195305-7195756,7197171-7197447
Length = 242
Score = 28.7 bits (61), Expect = 3.7
Identities = 25/88 (28%), Positives = 39/88 (44%)
Frame = +1
Query: 274 SLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQPSPGLS 453
S R++ A R + P P TA L + + LLP + A P +
Sbjct: 41 SARAASTAWNRCMRRPCRCPQS--ATALLHLLA-VALLHLLPHQGEEAPLAAAAADPAPA 97
Query: 454 TRPKLVVAYGYSENSDDIQISSVTWQKR 537
TR ++V+ GY + DD+ + VT+ KR
Sbjct: 98 TRREVVLCIGYDD--DDLALVDVTYPKR 123
>05_03_0372 + 13181649-13182321,13183149-13183213
Length = 245
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 369 IRDDSVKTVTISTGPITKRCAAAVARIVNASEARRCLRIF*K 494
+R D++ IS PI K+C +A+ ++ N S A CL+IF K
Sbjct: 128 LRMDALNRPGIS--PI-KKCTSAIRQLGNGSPAVECLKIFVK 166
>06_03_1056 + 27239176-27242361
Length = 1061
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 204 VIDMVYQPSVDRDLHEVVHTEVGYW 130
V D + S+DR LH HTE G W
Sbjct: 814 VFDFMPNYSLDRWLHRAKHTETGKW 838
>02_05_0074 - 25608689-25609138
Length = 149
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 346 TTATLPVTSETTASKLLPSARGRSLSGALQPSP 444
TTA L S +T+S LLPSA + + L P P
Sbjct: 4 TTAALAPPSTSTSSVLLPSAAAAAAARCLGPLP 36
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -3
Query: 351 CRPQTRRGSCWVFAFPRCG-PY*RAQ 277
CR T +G W A P+CG PY R Q
Sbjct: 2096 CRDSTLQGQEWRCAVPQCGQPYHREQ 2121
>01_07_0163 + 41578264-41578469,41578537-41579422
Length = 363
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 325 GSPSCLWTTA--TLPVTSETTASKLLPSARGRSLSGALQPSPGLSTRPKLVVAYGYSENS 498
GSP +W A ++P +S S L R + +L PSP + LV+ + ++
Sbjct: 175 GSPLNMWPLAASSIPSSSSLVGSVLTYGNRSFASMFSLLPSPAVYGDTPLVITRAKNYSA 234
Query: 499 DDI 507
DD+
Sbjct: 235 DDM 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,862,037
Number of Sequences: 37544
Number of extensions: 355939
Number of successful extensions: 883
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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