Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00610
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.24 
SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 30   1.7  
SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 30   1.7  
SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)                     28   6.7  
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              28   6.7  
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     28   6.7  
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_33123| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=7.9)           27   8.8  
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  27   8.8  

>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +1

Query: 319  PTGSPSCLWTTATLPVTSETTASKLLPSAR--GRSLSGALQPSPGLSTRPKLVVAYGYSE 492
            P G P      +    +SETT  KLLP  +  G S    L+ +P ++  P+L      SE
Sbjct: 1511 PEGKPGSPGQPSRQSASSETTNEKLLPGKQSPGASSDTELKGTPSVTNTPQLQGTSSASE 1570

Query: 493  NSDDIQISSVT 525
            ++   Q S  T
Sbjct: 1571 STQTQQSSQTT 1581


>SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 349 TATLPVTSETTASKLLPSARGRSLSGALQPSPGLSTRPKLV---VAYGYSENSDDIQISS 519
           T TLPVT   T +    + R   LSG+L P     +RP  +   V  G S  S  + +SS
Sbjct: 559 TGTLPVTLSGTMTPGTTTNRTVPLSGSLTPGTPTGSRPVTLSGTVTAGTSSTSRSVTLSS 618

Query: 520 V 522
           V
Sbjct: 619 V 619


>SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 672

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -3

Query: 285 RAQTVRSHCSSREASYLVKVSHFSFSPVIDMVYQPSVDRDLHEVVHTEVGYWGVRIQQ 112
           +A  + +H S R  + +  +SH +  PVI  V+  +  +   ++ HT +   G+R Q+
Sbjct: 269 KATGLGAHMSIRHVNNIFMISHGALHPVIYFVFNENFRKKFRQLTHTWLTR-GIRFQR 325


>SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 654

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -3

Query: 285 RAQTVRSHCSSREASYLVKVSHFSFSPVIDMVYQPSVDRDLHEVVHTEVGYWGVRIQQ 112
           +A  + +H S R  + +  +SH +  PVI  V+  +  +   ++ HT +   G+R Q+
Sbjct: 254 KATGLGAHMSIRHVNNIFMISHGALHPVIYFVFNENFRKKFRQLTHTWLTR-GIRFQR 310


>SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 355 TLPVTSETTASKLLPSARGRSLSGALQPSPGLSTRPKLVVAYGYSENS 498
           T P+T   T     P + GRS SGA++ S   S   K V A  +  +S
Sbjct: 295 TNPLTLRNTVDSSSPVSGGRSYSGAIKSSLSSSVNSKPVEATSHVADS 342


>SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)
          Length = 1105

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +1

Query: 292 RATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQPSPGLSTRPK 465
           +ATT  +   T +P  + T    P+TS  T++  +   R          + G STR K
Sbjct: 380 QATTTAATTSTAAPGNITTPTKGPITSNNTSTPTMSGGRKMPAKEPTTSTTGHSTRSK 437


>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 27/111 (24%), Positives = 44/111 (39%)
 Frame = +1

Query: 268 TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQPSPG 447
           T +  ++   TT  +   T +P    TT T P T+    +   P+    + S     +  
Sbjct: 27  TTAPTTNTALTTTTAPTTTTAP----TTTTAPTTTTAPTTTTTPN-NDYNTSDDYSTNND 81

Query: 448 LSTRPKLVVAYGYSENSDDIQISSVTWQKRLILWNRVRTARRLEDPDGIQH 600
            ST      +  YS N D      +  Q+RL    R++  RRL+    +QH
Sbjct: 82  YSTNNDYSTSDEYSTNDDYNTKQRLQHQRRLQHQQRLQHQRRLQHQRRLQH 132


>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 109 PHLCRSLAQRRLPILPLTVFLPVK 38
           P +CRS+     P +P++V+LP++
Sbjct: 118 PSICRSVYLSAYPSVPMSVYLPIR 141


>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 460 PKLVV-AYGYSENSDDIQISSVTWQKRLILWNRVRTARRLED 582
           P+L+   YG + + DDIQ+ SV   +R I+ N  +  +++ D
Sbjct: 760 PELITFKYGIASDDDDIQVKSV---ERYIIPNAQKATKKIRD 798


>SB_33123| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=7.9)
          Length = 271

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 460 PKLVV-AYGYSENSDDIQISSVTWQKRLILWNRVRTARRLED 582
           P+L+   YG + + DDIQ+ SV   +R I+ N  +  +++ D
Sbjct: 176 PELITFKYGIASDDDDIQVKSV---ERYIIPNAQKATKKIRD 214


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +1

Query: 268  TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGAL 432
            +NS ++S  ATTR++  PT   S    +   P T+ +T  +   +A+  +++G++
Sbjct: 944  SNSTQNSTEATTRKTGTPTSKTSYSKQSRAEPSTTYSTCQQ-ASTAQASAINGSI 997


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.132    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,069,299
Number of Sequences: 59808
Number of extensions: 390834
Number of successful extensions: 973
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)