Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00610
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006656-5|AAL32227.1|   75|Caenorhabditis elegans Hypothetical ...    32   0.27 
Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL132904-6|CAD91706.2|  326|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.     29   3.4  
AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical ...    29   3.4  
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AC006656-5|AAL32227.1|   75|Caenorhabditis elegans Hypothetical
           protein H12I13.6 protein.
          Length = 75

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +1

Query: 334 SCLWTTATLPVTSETTASKLLPSARGRSLSGALQPSPGLSTRPKLVVAYGYSENSDDIQI 513
           S + T A L    +  A K+     G  +    +P PG+  RP +  +  Y EN D    
Sbjct: 7   SVILTAAVLVNCGKFKAKKVEEEIGGSMMFAPRRPPPGVEARPTIPTSMVYMENDD---- 62

Query: 514 SSVTWQKR 537
           ++ TW++R
Sbjct: 63  ANSTWRQR 70


>Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical
           protein C04A11.2 protein.
          Length = 439

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = +1

Query: 274 SLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSAR 408
           S R+S RA +  ++ PTG+P+   T    PVT+ T++S + P+A+
Sbjct: 169 SARTSTRAASG-NRTPTGTPNM--TRNVRPVTNRTSSSNVSPAAQ 210


>AL132904-6|CAD91706.2|  326|Caenorhabditis elegans Hypothetical
           protein Y111B2A.9b protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 123 VLPNTLLRYVPPREDPDRQRAGTPCRLL 206
           V P+ L+   PP  DP  QR+GTP  LL
Sbjct: 4   VSPSNLVFPPPPSPDPYTQRSGTPSALL 31


>Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical
           protein F23H12.5 protein.
          Length = 802

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +1

Query: 304 RESKYPTGSPSCLWTTATLPVTSETTASKLLPSARG--RSLSGALQPSPGLST--RPKLV 471
           + ++ PT +PS   +T T   TS TT +   P+     ++ + +++P P   T   PK+V
Sbjct: 198 KSTEEPTSTPSTSTSTTTTTTTSTTTTTTEAPTTTTTIKTTTESIEPIPQTVTPNSPKIV 257

Query: 472 VAYGYSENSD 501
               + E  D
Sbjct: 258 DHEAFVEPED 267


>AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +1

Query: 235 KIRGFPRATM*TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGR 414
           K RGF R ++ T S  SS R ++        S +   TT +  VTS    +   P+A   
Sbjct: 7   KKRGFFRYSVLTTSSFSSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSS 66

Query: 415 SL---SGALQPSPGLSTRPKLVV 474
           S    S + +P P  S  P++ +
Sbjct: 67  SSVLPSTSSEPPPPASAPPRISI 89


>AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical
           protein F58D5.4a protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +1

Query: 235 KIRGFPRATM*TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGR 414
           K RGF R ++ T S  SS R ++        S +   TT +  VTS    +   P+A   
Sbjct: 7   KKRGFFRYSVLTTSSFSSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSS 66

Query: 415 SL---SGALQPSPGLSTRPKLVV 474
           S    S + +P P  S  P++ +
Sbjct: 67  SSVLPSTSSEPPPPASAPPRISI 89


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 298 TTRESKYPTGSPSCLWTTATLPVTSETT 381
           TT   +Y T SP+   TT+T P T+ +T
Sbjct: 196 TTERVRYATFSPNIPMTTSTTPTTTTST 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.132    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,735,938
Number of Sequences: 27780
Number of extensions: 284409
Number of successful extensions: 715
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)