Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00610
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19680.1 68414.m02453 expressed protein                             32   0.25 
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p...    29   2.4  
At3g07990.1 68416.m00976 serine carboxypeptidase S10 family prot...    29   3.1  
At1g79600.1 68414.m09281 ABC1 family protein contains Pfam domai...    29   3.1  
At1g77400.1 68414.m09013 expressed protein                             29   3.1  
At1g31870.1 68414.m03917 expressed protein                             27   7.2  
At2g40730.1 68415.m05024 HEAT repeat-containing protein contains...    27   9.6  
At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 ...    27   9.6  

>At1g19680.1 68414.m02453 expressed protein
          Length = 444

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 126 LPNTLLRYVPPREDPDRQRAGTPCRLLGRRKSD*P*QDKRLPSSYNVNE 272
           LP+     +PPR  P R+  G+P + L R+ SD      + P++Y+ +E
Sbjct: 148 LPSAHTHSLPPRSTPSRRARGSPGQQLFRQVSDSQTLGLKSPNNYSTSE 196


>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
           putative / ADP, ATP translocase, putative / adenine
           nucleotide translocase, putative strong similarity to
           SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
           chloroplast precursor (ADP/ATP translocase 1) (Adenine
           nucleotide translocase 1) {Arabidopsis thaliana};
           contains Pfam profile PF03219: TLC ATP/ADP transporter
          Length = 618

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +1

Query: 343 WTTATLPVTSETTASKLLPSARGRSLSGALQPSPGLSTRPKLVVAYGYSENSDDIQISSV 522
           W    +P+ + +   K+ P          L  SP +     LVVAYG S     I +  V
Sbjct: 330 WVNRYVPLPTRSKKKKVKPQMGTMESLKFLVSSPYIRDLATLVVAYGIS-----INLVEV 384

Query: 523 TWQKRL 540
           TW+ +L
Sbjct: 385 TWKSKL 390


>At3g07990.1 68416.m00976 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase II (CP-MII)
           GB:CAA70815 [Hordeum vulgare]
          Length = 459

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +1

Query: 385 SKLLPSARGRSLSGALQPSPGLSTRPKLVVAYGYSENSDDIQISS--VTWQKRLILWNRV 558
           S L    + R L   L   PG S+     VAYG +E     ++ S   T   +L  WN++
Sbjct: 70  SPLARDPKSRPLVLWLNGGPGCSS-----VAYGAAEEIGPFRVGSDGKTLHSKLYAWNKL 124

Query: 559 RTARRLEDPDGI 594
                LE P G+
Sbjct: 125 ANLLFLESPAGV 136


>At1g79600.1 68414.m09281 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 711

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 364 VTSETTASKLLPSARGRSLSGALQPSPGLSTRPKLVVAYGYSENSDDIQ 510
           V     A   L  AR +    A  PSP  S+RP  VV Y  ++ +DD+Q
Sbjct: 35  VNRRRLARAALVQARPKEDGAAASPSP--SSRPASVVQYRRADLADDLQ 81


>At1g77400.1 68414.m09013 expressed protein
          Length = 232

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 361 PVTSETTASKLLPSARGRSLSGALQPSPGLSTRPK 465
           P +  TT SKL P     SLSG   P P   + P+
Sbjct: 86  PHSFSTTPSKLKPPRTPSSLSGFYSPGPSFRSSPR 120


>At1g31870.1 68414.m03917 expressed protein
          Length = 561

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 355 TLPVTSETTASKLLPSARGRSLSGALQPSPG 447
           TLP+  E T S + P  R R+ + +  P PG
Sbjct: 104 TLPLNREDTQSNISPPRRQRTRNDSPSPEPG 134


>At2g40730.1 68415.m05024 HEAT repeat-containing protein contains
           INTERPRO:IPR000357 HEAT repeat
          Length = 798

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 343 WTTATLPVTSETTASKLLPSARGRSLSGALQPSPGLSTRPKLVVAYGYSENSDD 504
           W    L     + A   + +A+ R +S + +PS   S+RPK+      ++  DD
Sbjct: 671 WDLEPLDEPKPSPALANIQAAQKRPVSQSSRPSAATSSRPKISTVKAAAKTEDD 724


>At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 /
           ADP, ATP translocase 1 / adenine nucleotide translocase
           1 (AATP1) identical to SP|Q39002 Chloroplast ADP,ATP
           carrier protein 1, chloroplast precursor (ADP/ATP
           translocase 1) (Adenine nucleotide translocase 1)
           {Arabidopsis thaliana}
          Length = 624

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +1

Query: 343 WTTATLPVTSETTASKLLPSARGRSLSGALQPSPGLSTRPKLVVAYGYSENSDDIQISSV 522
           W    +P+ + +   K  P          L  SP +     LVVAYG S     I +  V
Sbjct: 333 WVNRYVPLPTRSKNKKEKPKMGTMESLKFLVSSPYIRDLATLVVAYGIS-----INLVEV 387

Query: 523 TWQKRL 540
           TW+ +L
Sbjct: 388 TWKSKL 393


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.132    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,082,746
Number of Sequences: 28952
Number of extensions: 270108
Number of successful extensions: 678
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)