Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00609
(566 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellu... 123 3e-27
UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellul... 109 4e-23
UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4... 108 8e-23
UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellu... 87 3e-16
UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Ze... 82 8e-15
UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17; Archa... 77 2e-13
UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4; ce... 67 2e-10
UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1; ... 56 6e-07
UniRef50_Q8BGG2 Cluster: Adult male spinal cord cDNA, RIKEN full... 54 2e-06
UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;... 52 9e-06
UniRef50_UPI00015B40B9 Cluster: PREDICTED: similar to mitochondr... 45 0.001
UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_Q1HPJ4 Cluster: Mitochondrial ribosomal protein S12; n=... 43 0.004
UniRef50_Q9NEH6 Cluster: EG:BACH59J11.1 protein; n=2; Bilateria|... 41 0.018
UniRef50_P10735 Cluster: 40S ribosomal protein S12, mitochondria... 41 0.018
UniRef50_UPI0000D55D7C Cluster: PREDICTED: similar to 40S riboso... 37 0.29
UniRef50_Q7SZ18 Cluster: Mrps12-prov protein; n=8; Euteleostomi|... 36 0.66
UniRef50_A4LVV0 Cluster: Tetratricopeptide TPR_2 repeat protein ... 36 0.87
UniRef50_Q9XTY5 Cluster: Putative uncharacterized protein; n=2; ... 36 0.87
UniRef50_O15235 Cluster: 28S ribosomal protein S12, mitochondria... 35 1.2
UniRef50_A5DX89 Cluster: 30S ribosomal protein S12; n=6; Sacchar... 34 2.0
UniRef50_A0CUX9 Cluster: Chromosome undetermined scaffold_29, wh... 33 3.5
UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellul... 32 8.1
>UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellular
organisms|Rep: 40S ribosomal protein S23 - Homo sapiens
(Human)
Length = 143
Score = 123 bits (297), Expect = 3e-27
Identities = 55/66 (83%), Positives = 62/66 (93%)
Frame = +3
Query: 66 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
+HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15 SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74
Query: 246 IKNERK 263
IKN +K
Sbjct: 75 IKNGKK 80
Score = 86.2 bits (204), Expect = 5e-16
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +1
Query: 325 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 450
VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 44.4 bits (100), Expect = 0.002
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +2
Query: 257 KKVTAFVPRDGCLNHIEENDE 319
KK+TAFVP DGCLN IEENDE
Sbjct: 79 KKITAFVPNDGCLNFIEENDE 99
>UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellular
organisms|Rep: 40S ribosomal protein S23 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 145
Score = 109 bits (262), Expect = 4e-23
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Frame = +3
Query: 36 PRNTNGA*HVN-HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 212
PR N A + HRR RWA+ +KK +GT +K++PFGG+SHAKGIVLEK+G+E+KQPN
Sbjct: 6 PRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPN 65
Query: 213 SAIRKCVRVQLIKNERK 263
SAIRKCVRVQLIKN +K
Sbjct: 66 SAIRKCVRVQLIKNGKK 82
Score = 74.9 bits (176), Expect = 1e-12
Identities = 35/42 (83%), Positives = 39/42 (92%)
Frame = +1
Query: 325 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 450
+AGFGRKG A GDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 104 LAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
Score = 43.2 bits (97), Expect = 0.004
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2
Query: 257 KKVTAFVPRDGCLNHIEENDE 319
KKVTAFVP DGCLN ++ENDE
Sbjct: 81 KKVTAFVPNDGCLNFVDENDE 101
>UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4;
Oryza sativa|Rep: Putative 40s ribosomal protein S23 -
Oryza sativa (Rice)
Length = 301
Score = 108 bits (260), Expect = 8e-23
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = +3
Query: 69 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 248
HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+
Sbjct: 87 HRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLV 145
Query: 249 KNERK 263
KN +K
Sbjct: 146 KNGKK 150
Score = 36.3 bits (80), Expect = 0.50
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 257 KKVTAFVPRDGCLNHIEEN 313
KK+ AFVP DGCLN I+EN
Sbjct: 149 KKIAAFVPNDGCLNFIKEN 167
>UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellular
organisms|Rep: 30S ribosomal protein S12P - Uncultured
methanogenic archaeon RC-I
Length = 142
Score = 87.0 bits (206), Expect = 3e-16
Identities = 40/67 (59%), Positives = 52/67 (77%)
Frame = +3
Query: 63 VNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 242
V+ R+ RW+D+++ + + KA+P GA AKGIVLEKVGVEAKQPNSAIRKC+R+Q
Sbjct: 12 VHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCIRIQ 71
Query: 243 LIKNERK 263
LIKN R+
Sbjct: 72 LIKNGRQ 78
Score = 42.3 bits (95), Expect = 0.008
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 337 GRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 444
GR G + GDIPGVRF+V KV +VSL + K+++P
Sbjct: 105 GRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGKRDKP 140
>UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Zea
mays|Rep: Putative 40S ribosomal protein - Zea mays
(Maize)
Length = 309
Score = 82.2 bits (194), Expect = 8e-15
Identities = 37/42 (88%), Positives = 41/42 (97%)
Frame = +1
Query: 325 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 450
+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 228 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 269
>UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17;
Archaea|Rep: 30S ribosomal protein S12P - Pyrobaculum
aerophilum
Length = 147
Score = 77.4 bits (182), Expect = 2e-13
Identities = 35/61 (57%), Positives = 47/61 (77%)
Frame = +3
Query: 72 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 251
R++ RW D +K+ +G K +P GA A+GIVLEKVGVEA++PN+A+RKCVRVQL+K
Sbjct: 20 RQKFRWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVK 79
Query: 252 N 254
N
Sbjct: 80 N 80
Score = 50.4 bits (115), Expect = 3e-05
Identities = 21/36 (58%), Positives = 30/36 (83%)
Frame = +1
Query: 337 GRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 444
G +G ++GDIPGVRFKV+KV VSL A+++ KK++P
Sbjct: 110 GPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145
Score = 34.3 bits (75), Expect = 2.0
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2
Query: 257 KKVTAFVPRDGCLNHIEENDE 319
K VTAFVP DG LN+I E+DE
Sbjct: 82 KVVTAFVPLDGSLNYINEHDE 102
>UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4;
cellular organisms|Rep: Protein splicing (Intein) site -
Caldivirga maquilingensis IC-167
Length = 661
Score = 67.3 bits (157), Expect = 2e-10
Identities = 31/61 (50%), Positives = 44/61 (72%)
Frame = +3
Query: 72 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 251
R++ RW+D ++KK +G K +P GA A+GIVLEKVGVEA++PN+A+RKCV +
Sbjct: 20 RQKFRWSDIQYKKRALGFIKKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVTPDTLI 79
Query: 252 N 254
N
Sbjct: 80 N 80
Score = 46.0 bits (104), Expect = 6e-04
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +1
Query: 337 GRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 444
G +G A GD+PGVRFKV KV VSL A+ KK++P
Sbjct: 624 GPEGRAYGDLPGVRFKVTKVNGVSLKAILLGKKQKP 659
>UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 102
Score = 56.0 bits (129), Expect = 6e-07
Identities = 27/50 (54%), Positives = 31/50 (62%)
Frame = -1
Query: 458 YTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSIRRF 309
Y YDLG SFFS +A ++T T TTL TPG+SP A PL P PA F
Sbjct: 3 YIYDLGFSFFSFHKANKETPETLTTLNLTPGISPLALPLLPKPANKTSSF 52
Score = 44.8 bits (101), Expect = 0.001
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = -2
Query: 280 GDECGHFLSFLMSCTRTHLRMAELGCLASTPTFSRTMPFA 161
G + FL FL++ T TH +AE GCL S P FS+T+P A
Sbjct: 63 GTKAVTFLPFLINWTSTHFSIAEFGCLDSIPIFSKTIPLA 102
>UniRef50_Q8BGG2 Cluster: Adult male spinal cord cDNA, RIKEN
full-length enriched library, clone:A330001L23
product:hypothetical protein, full insert sequence; n=8;
Euarchontoglires|Rep: Adult male spinal cord cDNA, RIKEN
full-length enriched library, clone:A330001L23
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 154
Score = 54.0 bits (124), Expect = 2e-06
Identities = 27/62 (43%), Positives = 36/62 (58%)
Frame = -1
Query: 254 VLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFT 75
VLNEL+ DA DGR+ L F + ++LC+R T +R+ L VGFL FV P L
Sbjct: 34 VLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGTPKRIGLQGCAQVGFLVLFVMPLLVP 93
Query: 74 TV 69
+V
Sbjct: 94 SV 95
>UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;
n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
Mus musculus
Length = 143
Score = 52.0 bits (119), Expect = 9e-06
Identities = 26/62 (41%), Positives = 35/62 (56%)
Frame = -1
Query: 254 VLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFT 75
VLNEL+ DA DGR+ L F + ++LC+R +R+ L VGFL FV P L
Sbjct: 65 VLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGAPKRIGLQGCAQVGFLVLFVMPLLVP 124
Query: 74 TV 69
+V
Sbjct: 125 SV 126
Score = 38.3 bits (85), Expect = 0.12
Identities = 14/31 (45%), Positives = 26/31 (83%)
Frame = -3
Query: 423 VESEERHVGYFYHLKTNSGNVTDGVTFTTES 331
++S++R++GYF HLK +S ++T +TF+T+S
Sbjct: 9 LQSQQRNIGYFNHLKEDSRDITYSMTFSTKS 39
>UniRef50_UPI00015B40B9 Cluster: PREDICTED: similar to mitochondrial
ribosomal protein S12; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to mitochondrial ribosomal protein
S12 - Nasonia vitripennis
Length = 173
Score = 45.2 bits (102), Expect = 0.001
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +3
Query: 138 NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
NPF GA AKG+VL+ + + K+PNSA RKCV V+L
Sbjct: 83 NPFNGAPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 118
>UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 128
Score = 43.6 bits (98), Expect = 0.003
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +1
Query: 325 VAGFGRKGHAVGDIPGVRFKVVK 393
++GFG KGHAVGDI GVRF+VVK
Sbjct: 71 ISGFGHKGHAVGDIRGVRFEVVK 93
>UniRef50_Q1HPJ4 Cluster: Mitochondrial ribosomal protein S12; n=3;
Coelomata|Rep: Mitochondrial ribosomal protein S12 -
Bombyx mori (Silk moth)
Length = 111
Score = 43.2 bits (97), Expect = 0.004
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +3
Query: 114 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
H+ + NP G AKG+VL+ V + K+PNSA RKCV V+L
Sbjct: 13 HIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL 56
>UniRef50_Q9NEH6 Cluster: EG:BACH59J11.1 protein; n=2;
Bilateria|Rep: EG:BACH59J11.1 protein - Drosophila
melanogaster (Fruit fly)
Length = 154
Score = 41.1 bits (92), Expect = 0.018
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +3
Query: 114 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
H+ T+ P G AKG+VL+ + + K+PNSA RKCV V+L
Sbjct: 56 HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 99
>UniRef50_P10735 Cluster: 40S ribosomal protein S12, mitochondrial
precursor; n=7; Coelomata|Rep: 40S ribosomal protein
S12, mitochondrial precursor - Drosophila melanogaster
(Fruit fly)
Length = 140
Score = 41.1 bits (92), Expect = 0.018
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +3
Query: 114 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
H+ T+ P G AKG+VL+ + + K+PNSA RKCV V+L
Sbjct: 42 HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL 85
>UniRef50_UPI0000D55D7C Cluster: PREDICTED: similar to 40S ribosomal
protein S12, mitochondrial precursor (MT-RPS12)
(Technical knockout locus protein); n=2; Coelomata|Rep:
PREDICTED: similar to 40S ribosomal protein S12,
mitochondrial precursor (MT-RPS12) (Technical knockout
locus protein) - Tribolium castaneum
Length = 156
Score = 37.1 bits (82), Expect = 0.29
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +3
Query: 114 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
H+ + P G KG+VL+ + + K+PNSA RKCV V+L
Sbjct: 60 HIKERKPRRPLDGKPFMKGVVLKTLIKKPKKPNSANRKCVLVRL 103
>UniRef50_Q7SZ18 Cluster: Mrps12-prov protein; n=8;
Euteleostomi|Rep: Mrps12-prov protein - Xenopus laevis
(African clawed frog)
Length = 150
Score = 35.9 bits (79), Expect = 0.66
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 141 PFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
P G KG+VL+ + + K+PNSA RKC RV+L
Sbjct: 62 PTFGCPQLKGVVLKTMIRKPKKPNSANRKCARVRL 96
>UniRef50_A4LVV0 Cluster: Tetratricopeptide TPR_2 repeat protein
precursor; n=1; Geobacter bemidjiensis Bem|Rep:
Tetratricopeptide TPR_2 repeat protein precursor -
Geobacter bemidjiensis Bem
Length = 596
Score = 35.5 bits (78), Expect = 0.87
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -2
Query: 145 KGLAFHFVPMWAFLNSLSAHRCSRRWFTCYAPFVFLGVYPFG*HDTN 5
+GL+F + WAF++++S H W + + F G+ P G H TN
Sbjct: 64 EGLSFESIK-WAFMSNVSGHWHPLTWLSLMMDYQFFGLDPMGYHLTN 109
>UniRef50_Q9XTY5 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 157
Score = 35.5 bits (78), Expect = 0.87
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +3
Query: 150 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
G SH KGIVL+ V K+PNS RKC V+L
Sbjct: 72 GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103
>UniRef50_O15235 Cluster: 28S ribosomal protein S12, mitochondrial
precursor; n=13; Deuterostomia|Rep: 28S ribosomal
protein S12, mitochondrial precursor - Homo sapiens
(Human)
Length = 138
Score = 35.1 bits (77), Expect = 1.2
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 132 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>UniRef50_A5DX89 Cluster: 30S ribosomal protein S12; n=6;
Saccharomycetales|Rep: 30S ribosomal protein S12 -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 183
Score = 34.3 bits (75), Expect = 2.0
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = +3
Query: 165 KGIVLEKVGVEAKQPNSAIRKCVRVQL 245
+G++L + ++ K+PNSA+RKC RV+L
Sbjct: 90 RGVILRIMILKPKKPNSALRKCARVRL 116
>UniRef50_A0CUX9 Cluster: Chromosome undetermined scaffold_29, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_29,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 107
Score = 33.5 bits (73), Expect = 3.5
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 69 HRREQ--RWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 242
H+R Q W K+F K + T+ + G H KG+++ K G + N + + +++
Sbjct: 30 HKRVQGRAWRRKQFNKRKVQTQLQKTLVGQQIHLKGVLVHKKGPNWHKGNKQLLEKEKIE 89
Query: 243 LIKNERK 263
L++ +R+
Sbjct: 90 LVQLKRE 96
>UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellular
organisms|Rep: 30S ribosomal protein S12 - Aquifex
aeolicus
Length = 128
Score = 32.3 bits (70), Expect = 8.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 126 KWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
K KA G +G+ + V K+PNSA+RK RV+L
Sbjct: 18 KSKAPALQGCPQKRGVCVRVYTVTPKKPNSALRKVARVRL 57
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 593,019,804
Number of Sequences: 1657284
Number of extensions: 12461475
Number of successful extensions: 28039
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 26905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27988
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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