Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00609
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 115 6e-27
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 115 6e-27
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 30 0.21
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 27 1.9
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 25 5.9
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.9
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 25 5.9
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 7.7
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 25 7.7
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 7.7
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 115 bits (276), Expect = 6e-27
Identities = 50/66 (75%), Positives = 60/66 (90%)
Frame = +3
Query: 66 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15 NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74
Query: 246 IKNERK 263
IKN +K
Sbjct: 75 IKNGKK 80
Score = 67.7 bits (158), Expect = 1e-12
Identities = 31/42 (73%), Positives = 36/42 (85%)
Frame = +1
Query: 325 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 450
++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 102 LSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
Score = 43.2 bits (97), Expect = 3e-05
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2
Query: 257 KKVTAFVPRDGCLNHIEENDE 319
KKVTAFVP DGCLN ++ENDE
Sbjct: 79 KKVTAFVPHDGCLNFVDENDE 99
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 115 bits (276), Expect = 6e-27
Identities = 50/66 (75%), Positives = 60/66 (90%)
Frame = +3
Query: 66 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15 NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74
Query: 246 IKNERK 263
IKN +K
Sbjct: 75 IKNGKK 80
Score = 67.7 bits (158), Expect = 1e-12
Identities = 31/42 (73%), Positives = 36/42 (85%)
Frame = +1
Query: 325 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 450
++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 102 LSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
Score = 43.2 bits (97), Expect = 3e-05
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2
Query: 257 KKVTAFVPRDGCLNHIEENDE 319
KKVTAFVP DGCLN ++ENDE
Sbjct: 79 KKVTAFVPHDGCLNFVDENDE 99
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 30.3 bits (65), Expect = 0.21
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 150 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
G+ +G+ V+ K+PNSA+RK RV+L
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL 78
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.1 bits (57), Expect = 1.9
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -1
Query: 191 TNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFTTVVHVLRAVRIPRGLPIW 21
++F +D++ C CT V+LP LE F PS V H++ A +P+ +P W
Sbjct: 302 SDFRQDESYCRICTQSCVTLP-----DILEAF--PSCHPPVDHLISA--LPQLMPRW 349
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3
Query: 87 WADKEFKKAHMGTKWKANPFGGASHAKGIV 176
W D EF H K+ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 566 FFFFFFAVHNIYYVLGFYIYELINNALP 483
FFFFFF H + + +I+ +N +P
Sbjct: 79 FFFFFFFSHCRRFHIAIFIHPYDSNVVP 106
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 447 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 325
SW L+++ V S+E+ GY L N+ D G+ ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 384 LKTNSGNVTDGVTFTTESRH*YSSFSSMWFRQPSR 280
+K + VTD T+S H Y + M FR+ R
Sbjct: 670 IKALTSTVTDSTLVDTQSFHPYKVVTDMIFREDRR 704
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 546 CTQYLLCTRILHL*TYKQRASRQQVTYHNVH 454
C QY +H+ K+ QQ+TY VH
Sbjct: 277 CLQYTNTDLEMHIWEEKETIYEQQMTYQKVH 307
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 347 PLRPNPATSIRRFLRCGLGNRHGGRMRSLSFVLNELYTDAFA 222
PLR ++RFL NR+ + S+ ++N LYTD F+
Sbjct: 794 PLRELSHYIVQRFLVQQDSNRYLHPLLSVMDLINLLYTDIFS 835
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,624
Number of Sequences: 5004
Number of extensions: 50688
Number of successful extensions: 97
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -