Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00609
(566 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 122 2e-28
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 85 5e-17
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 28 4.6
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 28 4.6
SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17) 28 6.1
SB_3221| Best HMM Match : rve (HMM E-Value=3) 27 8.1
>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 413
Score = 122 bits (294), Expect = 2e-28
Identities = 55/66 (83%), Positives = 61/66 (92%)
Frame = +3
Query: 66 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
+HRR+Q+W DK +KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 14 SHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 73
Query: 246 IKNERK 263
IKN +K
Sbjct: 74 IKNGKK 79
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +2
Query: 257 KKVTAFVPRDGCLNHIEENDE 319
KK+TAFVP DGCLN+IEENDE
Sbjct: 78 KKITAFVPNDGCLNYIEENDE 98
Score = 37.5 bits (83), Expect = 0.008
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +1
Query: 325 VAGFGRKGHAVGDIPGV 375
++GFGR+GHAVGDIPG+
Sbjct: 101 ISGFGRRGHAVGDIPGI 117
>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 143
Score = 84.6 bits (200), Expect = 5e-17
Identities = 38/42 (90%), Positives = 42/42 (100%)
Frame = +1
Query: 325 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 450
++GFGR+GHAVGDIPGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 102 ISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKKERPRS 143
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = +3
Query: 180 EKVGVEAKQPNSAIRKCVRVQLIKNERK 263
++ GVEAKQPNSAIRKCVRVQLIKN +K
Sbjct: 53 QEPGVEAKQPNSAIRKCVRVQLIKNGKK 80
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +2
Query: 257 KKVTAFVPRDGCLNHIEENDE 319
KK+TAFVP DGCLN+IEENDE
Sbjct: 79 KKITAFVPNDGCLNYIEENDE 99
>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 110 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 208
S HG MEG P W +S G P+ S C S +A
Sbjct: 85 SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117
>SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 866
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -1
Query: 341 RPNPATSIRRFLRCGLGNRHGGRMRSLSFVLNELYTDAFADGRVGLLSFYTNFLED 174
+P+ T IR FL+ L ++H +FV N+L GR+ FY NFL D
Sbjct: 69 QPSDKTEIRSFLKQYLLSQHKALP---AFVRNKLAKVIVDMGRLDWPHFYPNFLSD 121
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 416 LSTKRKRSDQDHRCTL**VTCCREARCL*VHKCKILVHNKYCV 544
+S+KR RS+ + C V CC E V KC V K CV
Sbjct: 1 MSSKRTRSESSNLC----VVCCEEIEFSAVGKCDHPVCYKCCV 39
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 416 LSTKRKRSDQDHRCTL**VTCCREARCL*VHKCKILVHNKYCV 544
+S+KR RS+ + C V CC E V KC V K CV
Sbjct: 1 MSSKRTRSESSNLC----VVCCEEIEFSAVGKCDHPVCYKCCV 39
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -2
Query: 178 RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 83
R +PF+ APPKG F VP+W +F N S+ HR
Sbjct: 902 RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936
>SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)
Length = 1088
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 271 CGHFLSFLMSCTRTHLRMAELGCLASTPTFS 179
CG FL+F M+ + ELGC+ S P S
Sbjct: 608 CGAFLTFGMAAAVIGPTLLELGCVTSRPVNS 638
>SB_3221| Best HMM Match : rve (HMM E-Value=3)
Length = 324
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 473 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRP 336
S T TYDL SF+S+ + + LAT +K++P + + L+P
Sbjct: 9 SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKP 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,893,658
Number of Sequences: 59808
Number of extensions: 416740
Number of successful extensions: 808
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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