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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00609
         (566 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S...   123   4e-28
CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.               123   4e-28
BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23 p...   123   4e-28
AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23 p...    85   2e-16
Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal p...    35   0.17 
CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.               35   0.17 
BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal...    35   0.17 
BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal...    35   0.17 
BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal...    35   0.17 
AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12 p...    35   0.17 
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.     30   6.5  

>D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S28
           homologue protein.
          Length = 143

 Score =  123 bits (297), Expect = 4e-28
 Identities = 55/66 (83%), Positives = 62/66 (93%)
 Frame = +3

Query: 66  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
           +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15  SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74

Query: 246 IKNERK 263
           IKN +K
Sbjct: 75  IKNGKK 80



 Score = 86.2 bits (204), Expect = 7e-17
 Identities = 41/42 (97%), Positives = 41/42 (97%)
 Frame = +1

Query: 325 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 450
           VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143



 Score = 44.4 bits (100), Expect = 3e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +2

Query: 257 KKVTAFVPRDGCLNHIEENDE 319
           KK+TAFVP DGCLN IEENDE
Sbjct: 79  KKITAFVPNDGCLNFIEENDE 99


>CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.
          Length = 143

 Score =  123 bits (297), Expect = 4e-28
 Identities = 55/66 (83%), Positives = 62/66 (93%)
 Frame = +3

Query: 66  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
           +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15  SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74

Query: 246 IKNERK 263
           IKN +K
Sbjct: 75  IKNGKK 80



 Score = 86.2 bits (204), Expect = 7e-17
 Identities = 41/42 (97%), Positives = 41/42 (97%)
 Frame = +1

Query: 325 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 450
           VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143



 Score = 44.4 bits (100), Expect = 3e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +2

Query: 257 KKVTAFVPRDGCLNHIEENDE 319
           KK+TAFVP DGCLN IEENDE
Sbjct: 79  KKITAFVPNDGCLNFIEENDE 99


>BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23
           protein.
          Length = 143

 Score =  123 bits (297), Expect = 4e-28
 Identities = 55/66 (83%), Positives = 62/66 (93%)
 Frame = +3

Query: 66  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
           +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15  SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74

Query: 246 IKNERK 263
           IKN +K
Sbjct: 75  IKNGKK 80



 Score = 86.2 bits (204), Expect = 7e-17
 Identities = 41/42 (97%), Positives = 41/42 (97%)
 Frame = +1

Query: 325 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 450
           VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143



 Score = 44.4 bits (100), Expect = 3e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +2

Query: 257 KKVTAFVPRDGCLNHIEENDE 319
           KK+TAFVP DGCLN IEENDE
Sbjct: 79  KKITAFVPNDGCLNFIEENDE 99


>AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23
           protein.
          Length = 59

 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 40/41 (97%), Positives = 40/41 (97%)
 Frame = +1

Query: 325 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 447
           VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 19  VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59



 Score = 35.5 bits (78), Expect = 0.13
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +2

Query: 272 FVPRDGCLNHIEENDE 319
           FVP DGCLN IEENDE
Sbjct: 1   FVPNDGCLNFIEENDE 16


>Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 precursor protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 132 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 132 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 132 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 132 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 132 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12
           protein.
          Length = 138

 Score = 35.1 bits (77), Expect = 0.17
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 132 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 245
           K  P  G    KG+VL     + K+PNSA RKC RV+L
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85


>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
          Length = 1332

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 110 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 238
           SPHG +M G P          RP ES+C         PQ RPC
Sbjct: 37  SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,600,065
Number of Sequences: 237096
Number of extensions: 1971621
Number of successful extensions: 6066
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6066
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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