Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00609
(566 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 107 4e-24
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 99 2e-21
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ... 29 2.9
At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase, p... 28 3.8
At4g34138.1 68417.m04844 UDP-glucoronosyl/UDP-glucosyl transfera... 28 5.0
At1g32960.1 68414.m04059 subtilase family protein contains simil... 28 5.0
At1g32940.1 68414.m04057 subtilase family protein contains simil... 28 5.0
At1g28470.1 68414.m03501 no apical meristem (NAM) family protein... 27 6.6
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
ribosomal protein S23, Fragaria x ananassa, PIR:S56673
Length = 142
Score = 107 bits (258), Expect = 4e-24
Identities = 47/64 (73%), Positives = 56/64 (87%)
Frame = +3
Query: 72 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 251
R QRWADK++KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17 RINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75
Query: 252 NERK 263
N +K
Sbjct: 76 NGKK 79
Score = 82.2 bits (194), Expect = 2e-16
Identities = 37/42 (88%), Positives = 41/42 (97%)
Frame = +1
Query: 325 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 450
+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 43.6 bits (98), Expect = 9e-05
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2
Query: 257 KKVTAFVPRDGCLNHIEENDE 319
KK+ AFVP DGCLN+IEENDE
Sbjct: 78 KKIAAFVPNDGCLNYIEENDE 98
>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
to 40S ribosomal protein S23 (S12) GB:P46297 from
[Fragaria x ananassa]
Length = 142
Score = 99.1 bits (236), Expect = 2e-21
Identities = 45/64 (70%), Positives = 53/64 (82%)
Frame = +3
Query: 72 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 251
R QRWADK +KK++ G +WK PF +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17 RITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75
Query: 252 NERK 263
N +K
Sbjct: 76 NGKK 79
Score = 82.2 bits (194), Expect = 2e-16
Identities = 37/42 (88%), Positives = 41/42 (97%)
Frame = +1
Query: 325 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 450
+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 43.6 bits (98), Expect = 9e-05
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2
Query: 257 KKVTAFVPRDGCLNHIEENDE 319
KK+ AFVP DGCLN+IEENDE
Sbjct: 78 KKIAAFVPNDGCLNYIEENDE 98
>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 289
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 385 VVKVANVSLLALYKEKKERPRS*VYIVISDLLSGSALFI 501
VV++ +SL Y KKE+ + +++ D+L A+F+
Sbjct: 80 VVQIVYISLFFFYAPKKEKTLTVKFVLFVDVLGFGAIFV 118
>At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase,
putative similar to dihydrolipoamide acetyltransferase
(E2) subunit of PDC [Arabidopsis thaliana] GI:559395;
contains Pfam profiles PF00198: 2-oxo acid
dehydrogenases acyltransferase (catalytic domain),
PF00364: Biotin-requiring enzyme, PF02817: e3 binding
domain; supporting cDNA
gi|5881964|gb|AF066080.1|AF066080
Length = 637
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 132 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNERK*PH 272
K P +S +K V + PNS IRK + +L+++++K PH
Sbjct: 386 KETPSKSSSTSKPSVTQSDNNYEDFPNSQIRKIIAKRLLESKQKIPH 432
>At4g34138.1 68417.m04844 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 488
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 23 KWVNPEEYERRVTREPPS*TAMGGQRIQESPHGYEMEG*PFRWCISRKGHR-PRESW 190
KW++ ++ + + + ++ +++ E G +M G F W ++RKG + +E W
Sbjct: 280 KWLDSKKCDSVIYMAFGTMSSFKNEQLIEIAAGLDMSGHDFVWVVNRKGSQVEKEDW 336
>At1g32960.1 68414.m04059 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
Length = 777
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 87 WADKEFKKAHMGTKWKANPFGGASHAKG 170
W+ F+ A + T W+ +PFG A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602
>At1g32940.1 68414.m04057 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 774
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 87 WADKEFKKAHMGTKWKANPFGGASHAKG 170
W+ F+ A + T W+ +PFG A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599
>At1g28470.1 68414.m03501 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAM protein GI:6066594 from [Petunia hybrida]
Length = 314
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -1
Query: 341 RPNPATSIRRF----LRCGLGNRHGGRMRSLSFVLNELYTDAFADGRVGLLSF 195
+P ++ RF ++ G G HGG+ + V+ EL DG LSF
Sbjct: 248 KPKNLVNLNRFSYENIQAGFGYEHGGKSEETTQVIRELVVRE-GDGSCSFLSF 299
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,908,292
Number of Sequences: 28952
Number of extensions: 277554
Number of successful extensions: 633
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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