Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00608
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943...    30   2.0  
02_05_1113 + 34207997-34208380                                         29   4.5  
06_03_1056 + 27239176-27242361                                         28   6.0  
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497...    28   6.0  

>06_03_0105 +
           16693771-16693780,16693833-16693876,16694274-16694348,
           16694548-16694784,16694880-16695050,16695137-16695250
          Length = 216

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 355 NWKCRCRPQTRRGSCWVF 302
           N+ CRCRP+ RR   W +
Sbjct: 5   NYVCRCRPENRRNKGWAY 22


>02_05_1113 + 34207997-34208380
          Length = 127

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 537 WSRVRTARRLEDPDGIQHEDGLCRRNVNQQP 629
           W R RTARR    DG   E+G C R   + P
Sbjct: 45  WRRSRTARRTPVADGDGSEEGGCGRGRRRGP 75


>06_03_1056 + 27239176-27242361
          Length = 1061

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 193 VIDMVYQPSVDRDLHEVVHTEVGYW 119
           V D +   S+DR LH   HTE G W
Sbjct: 814 VFDFMPNYSLDRWLHRAKHTETGKW 838


>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
            18449864-18449959,18452287-18452447,18452669-18452790,
            18452872-18453239,18453653-18453739,18453835-18453969,
            18454349-18454471,18454771-18454854,18455023-18455187,
            18455310-18455486,18455660-18455773,18455912-18456016,
            18457056-18457174,18457244-18457385,18457461-18457555,
            18457757-18457862,18458125-18458204,18458285-18458461,
            18459828-18459912,18460024-18460104,18460208-18460351,
            18460468-18460563,18460654-18460854,18461462-18461895,
            18462417-18462478,18462622-18462872,18462956-18463030,
            18463110-18463300,18463696-18463867,18463956-18464020,
            18464646-18464778,18464861-18464962,18465047-18465130,
            18465656-18465730,18465818-18465877,18465967-18466223,
            18466560-18466608,18466781-18466941,18467013-18467079,
            18467174-18467299,18467422-18467592,18468566-18468769,
            18469059-18469165,18469608-18469737,18469774-18469959,
            18470704-18470742
          Length = 2202

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 340  CRPQTRRGSCWVFAFPRCG-PY*RAQTVRSIV 248
            CR  T +G  W  A P+CG PY R Q   +++
Sbjct: 2096 CRDSTLQGQEWRCAVPQCGQPYHREQMENALL 2127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,251,142
Number of Sequences: 37544
Number of extensions: 386639
Number of successful extensions: 956
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)