Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00608
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  29   2.6  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)                     29   4.6  
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)                    28   8.0  
SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)                     28   8.0  
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     28   8.0  

>SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = +2

Query: 209 VTNLDKIRGFPRSYNGTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLP 388
           V +L+     P S+ G +   S + A  ++SK             T P+T   T     P
Sbjct: 260 VLSLNLKMDLPESFEGPSPASSPMAAPAKKSK----------ENGTNPLTLRNTVDSSSP 309

Query: 389 SARGRSLSGALQTSPGLSTRPK 454
            + GRS SGA+++S   S   K
Sbjct: 310 VSGGRSYSGAIKSSLSSSVNSK 331


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +2

Query: 227  IRGFPRSYNGTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRS 406
            I G P S   +NS ++S  ATTR++  PT   S    +   P T+ +T  +   +A+  +
Sbjct: 935  INGAPVSKT-SNSTQNSTEATTRKTGTPTSKTSYSKQSRAEPSTTYSTCQQ-ASTAQASA 992

Query: 407  LSGAL--QTSPG 436
            ++G++  +TS G
Sbjct: 993  INGSITSKTSTG 1004


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 245 SYNGTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTS-ETTASKLLPSARGRSLSGAL 421
           +YN T  +    + TT  S   T   +   TTA+L  T+ ETT + L  +A   + +  L
Sbjct: 40  TYNYTIKISEKRKKTTTASLATTAPET---TTASLVTTAPETTTASLATTAPETTTASFL 96

Query: 422 QTSPGLSTRPK 454
            T+P  +T P+
Sbjct: 97  TTAPEATTAPE 107



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +2

Query: 257 TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTS-ETTASKLLPSARGRSLSGALQTSP 433
           T SL ++   TT  S   T +P    TTA+L  T+ E T + L+ +A   + +  + T+P
Sbjct: 224 TASLATTAPETTTAS-LATTAPEA--TTASLATTAPEATTASLVTTAPETTTASLVTTAP 280

Query: 434 GLSTRPKA 457
             +T P+A
Sbjct: 281 EATTAPEA 288



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +2

Query: 257 TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTS-ETTASKLLPSARGRSLSGALQTSP 433
           T SL ++   TT  S   T +P    TTA+L  T+ E T + LL +A   + +    T+P
Sbjct: 639 TASLATTAPKTTTAS-LATTAPEA--TTASLVTTAPEATTASLLTTAPETTTASLATTAP 695

Query: 434 GLSTRPKA 457
             +T P+A
Sbjct: 696 EATTAPEA 703


>SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)
          Length = 1105

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 281 RATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPK 454
           +ATT  +   T +P  + T    P+TS  T++  +   R         ++ G STR K
Sbjct: 380 QATTTAATTSTAAPGNITTPTKGPITSNNTSTPTMSGGRKMPAKEPTTSTTGHSTRSK 437


>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 3404

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -2

Query: 575 WVFKSAGSSYPAP*YKPFLPTHVEILNVVRIFRISVGNDELSDALTILATSA 420
           + F S+ SS       P +P H  ++NV  +  + +    +SD   +  T A
Sbjct: 477 YTFNSSSSSVTVHLQSPLIPGHKYVINVTGVNNVGLSASLVSDGFVVDITPA 528


>SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 2245

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -2

Query: 575  WVFKSAGSSYPAP*YKPFLPTHVEILNVVRIFRISVGNDELSDALTILATSA 420
            + F S+ SS       P +P H  ++NV  +  + +    +SD   +  T A
Sbjct: 1471 YTFNSSSSSVTVHLQSPLIPGHKYVINVTGVNNVGLSASLVSDGFVVDITPA 1522


>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 98  PHLCRSLAQRRLPILPLTVFLPVK 27
           P +CRS+     P +P++V+LP++
Sbjct: 118 PSICRSVYLSAYPSVPMSVYLPIR 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,689,198
Number of Sequences: 59808
Number of extensions: 425733
Number of successful extensions: 1188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)