BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= heS00608 (678 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical pr... 32 0.43 U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical pr... 30 1.7 AL132904-6|CAD91706.2| 326|Caenorhabditis elegans Hypothetical ... 29 2.3 Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical pr... 29 3.0 Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 29 4.0 U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical p... 29 4.0 AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 29 4.0 Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 5.3 U80446-4|AAB37804.1| 443|Caenorhabditis elegans Hypothetical pr... 28 5.3 AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle... 28 5.3 AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 28 5.3 AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 7.0 AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 7.0 AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 7.0 U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical pr... 27 9.3 >Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical protein C04A11.2 protein. Length = 439 Score = 31.9 bits (69), Expect = 0.43 Identities = 24/83 (28%), Positives = 42/83 (50%) Frame = +2 Query: 212 TNLDKIRGFPRSYNGTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPS 391 T+ +R + S R+S RA + ++ PTG+P+ T PVT+ T++S + P+ Sbjct: 152 TSTPVVRNILQQLTTPRSARTSTRAASG-NRTPTGTPNM--TRNVRPVTNRTSSSNVSPA 208 Query: 392 ARGRSLSGALQTSPGLSTRPKAR 460 A Q +PG S+ ++R Sbjct: 209 A---------QVTPGTSSNHRSR 222 >U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical protein T26A8.1 protein. Length = 708 Score = 29.9 bits (64), Expect = 1.7 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Frame = +2 Query: 272 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARG--RSLSGALQTSPGLST 445 SS +TT + T +PS T T+P T+ + + R +G L TS + T Sbjct: 339 SSTTSTTTTTTTTTETPSTTVITTTIPSTTSEPEATIDVKTRDSKEDTNGVLPTSSAIET 398 Query: 446 RPKARRC 466 P C Sbjct: 399 PPYPENC 405 >AL132904-6|CAD91706.2| 326|Caenorhabditis elegans Hypothetical protein Y111B2A.9b protein. Length = 326 Score = 29.5 bits (63), Expect = 2.3 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +1 Query: 112 VLPNTLLRYVPPREDPDRQRAGTPCRLL 195 V P+ L+ PP DP QR+GTP LL Sbjct: 4 VSPSNLVFPPPPSPDPYTQRSGTPSALL 31 >Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical protein T06G6.8 protein. Length = 417 Score = 29.1 bits (62), Expect = 3.0 Identities = 33/95 (34%), Positives = 40/95 (42%), Gaps = 9/95 (9%) Frame = +2 Query: 272 SSV-RATTRESKYPT------GSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTS 430 SSV +ATT S PT S TTA LP T+ TT + S + AL T+ Sbjct: 224 SSVWKATTTPSDLPTKPSRTRSLTSTSTTTAKLPTTTSTTFAAPQASTEPSEATEALATA 283 Query: 431 --PGLSTRPKARRCLRIF*KF*RHSKSRRELAKTA 529 L T+P R I S S +L KTA Sbjct: 284 TPADLPTKPSGREITTITGTRKLSSTSTTKLPKTA 318 >Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein C10C6.1 protein. Length = 1565 Score = 28.7 bits (61), Expect = 4.0 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Frame = +2 Query: 242 RSYNGTNSLR-SSVRATTRESKY---PTGSPSCLWTTATLPVTSETTASKLLPSARGRSL 409 RS N + R SS+R+T+ + P + S ATLP T+ + S++ S+ S Sbjct: 1364 RSVNEIETNRPSSLRSTSNSHHHHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSA 1423 Query: 410 SGALQTSPGLST 445 S + +SP ++ Sbjct: 1424 SNSGTSSPAATS 1435 >U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical protein C32D5.11 protein. Length = 770 Score = 28.7 bits (61), Expect = 4.0 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Frame = +2 Query: 242 RSYNGTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARG--RSLSG 415 R+Y+ VR T E P + TT TLP++ + T S+ + R R L Sbjct: 486 RAYHMMRDRDVRVRYPTTEEPVPVEPVTFGQTTRTLPISQQPTTSRSHMTLRSAMRRLDS 545 Query: 416 ALQTS---PGLSTRPKARR 463 T P + +RP+ RR Sbjct: 546 DRPTDEEIPPIESRPQTRR 564 >AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein protein. Length = 1565 Score = 28.7 bits (61), Expect = 4.0 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Frame = +2 Query: 242 RSYNGTNSLR-SSVRATTRESKY---PTGSPSCLWTTATLPVTSETTASKLLPSARGRSL 409 RS N + R SS+R+T+ + P + S ATLP T+ + S++ S+ S Sbjct: 1364 RSVNEIETNRPSSLRSTSNSHHHHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSA 1423 Query: 410 SGALQTSPGLST 445 S + +SP ++ Sbjct: 1424 SNSGTSSPAATS 1435 >Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical protein C30H6.11 protein. Length = 460 Score = 28.3 bits (60), Expect = 5.3 Identities = 17/66 (25%), Positives = 27/66 (40%) Frame = +2 Query: 257 TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPG 436 T + ++ TT + T +P+ TT T P T+ TTA + + T Sbjct: 255 TTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTTSTPTT 314 Query: 437 LSTRPK 454 +T PK Sbjct: 315 TTTTPK 320 >U80446-4|AAB37804.1| 443|Caenorhabditis elegans Hypothetical protein F56A3.2 protein. Length = 443 Score = 28.3 bits (60), Expect = 5.3 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Frame = +2 Query: 227 IRGFPRSYNGTNSLRSSVRAT-----TRESKYPTGSPSCLWTTATLPVTSETTASKLLPS 391 I G PRS++G +R S A+ T + P + + T + P S SK S Sbjct: 24 IEGIPRSFSGDKKIRFSFGASNMSQDTTQEIIPEDTDTVPLTIPSTPALSGKFDSKTPKS 83 Query: 392 ARGRSLS 412 R RS+S Sbjct: 84 VRRRSVS 90 >AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucleotide exchange factorfor RAS protein. Length = 1413 Score = 28.3 bits (60), Expect = 5.3 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +2 Query: 239 PRSYNGTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARG 400 PRS S S+ TT+ P S + +TAT P T TT + PS+ G Sbjct: 1276 PRSSRANQSNSVSLPPTTQAPMPPAPKSSGMMSTATSPTTLTTTTT---PSSAG 1326 >AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos homolog protein 1 protein. Length = 1493 Score = 28.3 bits (60), Expect = 5.3 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +2 Query: 239 PRSYNGTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARG 400 PRS S S+ TT+ P S + +TAT P T TT + PS+ G Sbjct: 1276 PRSSRANQSNSVSLPPTTQAPMPPAPKSSGMMSTATSPTTLTTTTT---PSSAG 1326 >AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein protein. Length = 10578 Score = 27.9 bits (59), Expect = 7.0 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = +2 Query: 272 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRP 451 S+ R +TR S T S T T+ + +T + + P +GRSLS + + R Sbjct: 2313 STPRGSTRSSNLTTSQDSQATTKMTVS-SEDTIEAPIAPPRKGRSLSRDAERLLEIQPRA 2371 Query: 452 KARR 463 RR Sbjct: 2372 PPRR 2375 >AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein protein. Length = 18519 Score = 27.9 bits (59), Expect = 7.0 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = +2 Query: 272 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRP 451 S+ R +TR S T S T T+ + +T + + P +GRSLS + + R Sbjct: 2313 STPRGSTRSSNLTTSQDSQATTKMTVS-SEDTIEAPIAPPRKGRSLSRDAERLLEIQPRA 2371 Query: 452 KARR 463 RR Sbjct: 2372 PPRR 2375 >AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein protein. Length = 18534 Score = 27.9 bits (59), Expect = 7.0 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = +2 Query: 272 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRP 451 S+ R +TR S T S T T+ + +T + + P +GRSLS + + R Sbjct: 2313 STPRGSTRSSNLTTSQDSQATTKMTVS-SEDTIEAPIAPPRKGRSLSRDAERLLEIQPRA 2371 Query: 452 KARR 463 RR Sbjct: 2372 PPRR 2375 >U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical protein F53B3.2 protein. Length = 634 Score = 27.5 bits (58), Expect = 9.3 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +2 Query: 287 TTRESKYPTGSPSCLWTTATLPVTSETT 370 TT +Y T SP+ TT+T P T+ +T Sbjct: 196 TTERVRYATFSPNIPMTTSTTPTTTTST 223 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,903,010 Number of Sequences: 27780 Number of extensions: 313039 Number of successful extensions: 859 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 784 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 859 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1539654388 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -