Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00608
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.22 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   0.66 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 125 PYFGMYHLVKIPIDRGLVHHVDYWGEGKVTNLDKIRGFPRSYNGTNSLRSSVRATTRE 298
           P   +  L ++ + R  +  V+  G+  +T L  +R F  SYN  +SL   + A+TR+
Sbjct: 232 PLLDLRQLQELHLQRNAI--VEIAGDA-LTGLTVLRTFNASYNSLDSLPEGLFASTRD 286


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 232 RLPSELQWNEQFALVSKGHNEGKQIPNRI 318
           R P+E  W+   A +S      K+IPN I
Sbjct: 149 RTPTEASWHSPEAHISVAQKLQKEIPNSI 177


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 254 GTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLL 385
           G+  L     +T+  +   T + +   TTAT   T+ TTA+ L+
Sbjct: 90  GSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTATGLI 133



 Score = 23.4 bits (48), Expect = 2.0
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = +2

Query: 251 NGTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTS 430
           NG  + R   +A + ++  P  + +    T TLP  S T      PSA   + +     +
Sbjct: 198 NG-GAARDESKAGSTDASTPA-TVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMT 255

Query: 431 PGLSTRPKAR 460
            G +T P  R
Sbjct: 256 TGTTTIPTRR 265


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 184 MVYQPSVDRDLHEVVHTEV 128
           +VY+PS  R  HE+  T+V
Sbjct: 515 LVYEPSACRPRHEIRSTDV 533


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 169 SVDRDLHEVVHTEVGYWGVRIQQVLICVVVWLRGG 65
           S+DR +H       G W  R   V    VVWL  G
Sbjct: 120 SLDRYIHIKDPLRYGRWVTRRIAVAGIAVVWLLAG 154


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 125 PYFGMYH-LVKIPIDRGLVHHVDYWGEGKVTNLDKI 229
           P +  +H L++IP D    + +D W     + L+KI
Sbjct: 522 PKYDSHHKLIEIPEDLKYFYEIDNWMLDLNSGLNKI 557


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 125 PYFGMYH-LVKIPIDRGLVHHVDYWGEGKVTNLDKI 229
           P +  +H L++IP D    + +D W     + L+KI
Sbjct: 522 PKYDSHHKLIEIPEDLKYFYEIDNWMLDLNSGLNKI 557


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,919
Number of Sequences: 438
Number of extensions: 3621
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)