Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00608
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10830.1 68414.m01244 sodium symporter-related contains five ...    30   1.6  
At5g17990.1 68418.m02110 anthranilate phosphoribosyltransferase ...    27   8.6  
At1g19680.1 68414.m02453 expressed protein                             27   8.6  

>At1g10830.1 68414.m01244 sodium symporter-related contains five
           transmembrane domains; Interpro IPR001991
           Sodium:dicarboxylate symporter; EST gb|F13926 comes from
           this gene
          Length = 367

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 641 KLYKWLLIDVASAKTIFVLNAVWVFKSAG 555
           KL  W+   V     +F+LN VW+  S G
Sbjct: 92  KLVSWVYFGVVLGVVLFILNVVWIDNSTG 120


>At5g17990.1 68418.m02110 anthranilate phosphoribosyltransferase
           identical to anthranilate phosphoribosyltransferase,
           chloroplast precursor (EC 2.4.2.18) SP:Q02166 from
           [Arabidopsis thaliana]
          Length = 444

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 367 DSVKTVTISTGP--ITKRCAADVARIVNASESSSL-PTDILKIL 489
           D   TV ISTG   +   C A VA+  N S SS+    D+L+ L
Sbjct: 188 DGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSADVLEAL 231


>At1g19680.1 68414.m02453 expressed protein
          Length = 444

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 115 LPNTLLRYVPPREDPDRQRAGTPCRLLGRGKSD 213
           LP+     +PPR  P R+  G+P + L R  SD
Sbjct: 148 LPSAHTHSLPPRSTPSRRARGSPGQQLFRQVSD 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,236,549
Number of Sequences: 28952
Number of extensions: 296495
Number of successful extensions: 828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)