Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00607X
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    87   7e-19
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    86   2e-18
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   2.4  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   2.4  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   3.1  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    25   3.1  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   4.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   4.1  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    25   5.5  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    24   7.2  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      24   9.5  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    24   9.5  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 87.4 bits (207), Expect = 7e-19
 Identities = 36/70 (51%), Positives = 53/70 (75%)
 Frame = +3

Query: 45  GGLDVLALNEEDVTKMLAATTHLGADNVNFQMETYVYKRRADGTHVLNLRRTWEKLVLAA 224
           G  ++L   +ED+ ++LAA  H+G+ N+  +M+ YV+KRR+DG H+LNL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 225 RAVVAIKNPA 254
           R +  I+NPA
Sbjct: 65  RVIATIENPA 74



 Score = 62.5 bits (145), Expect = 2e-11
 Identities = 30/49 (61%), Positives = 34/49 (69%)
 Frame = +2

Query: 242 QEPRYVFVSSSRPFGQRAVLXFAAHTGAMPIAGRFTPGAFTNQIPAAFR 388
           + P  V V S+R +G RAVL FAAHTGA  IAGRFTPG FTN I   +R
Sbjct: 71  ENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYR 119


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 85.8 bits (203), Expect = 2e-18
 Identities = 35/66 (53%), Positives = 51/66 (77%)
 Frame = +3

Query: 57  VLALNEEDVTKMLAATTHLGADNVNFQMETYVYKRRADGTHVLNLRRTWEKLVLAARAVV 236
           VL   ++D+  +LAA +H+G+ N+  +ME YV+KRR+DG H++NL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 237 AIKNPA 254
            I+NPA
Sbjct: 70  TIENPA 75



 Score = 66.9 bits (156), Expect = 1e-12
 Identities = 32/49 (65%), Positives = 35/49 (71%)
 Frame = +2

Query: 242 QEPRYVFVSSSRPFGQRAVLXFAAHTGAMPIAGRFTPGAFTNQIPAAFR 388
           + P  V V SSRP+G RAVL FAAHTGA  IAGRFTPG FTN I   +R
Sbjct: 72  ENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYR 120


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -2

Query: 263 RTHSGVLDGYDSTSSQ--NKFFPGTTQVEHMGTISTSFVDIGLHLEVN 126
           RT + +    DSTS    NK+  G   V  +   S S  DIGLH E +
Sbjct: 345 RTSAEMFTTVDSTSRAIVNKYSLGNN-VSTVNPFSKSLYDIGLHAETD 391


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 58  CSPSTRKMSPKCLLQPPILGQTMLTSRWRPMST-NDVLMVPMCSTCVVPGKNLFWLLVL 231
           C PS+  +S    ++   LG   LT  W  +S+ ++ L+ P  +TC +    +FW+ ++
Sbjct: 305 CKPSSAVLSQIFGVKTG-LGLFPLTLDWAQISSLSNPLITPWWATCCIFTSFVFWIWIV 362


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 148  MSTNDVLMVPMCSTCVVPGKNLFWLLVL 231
            M+ N V  + +  T   PG N FW L++
Sbjct: 920  MTLNPVFQIGLNGTTHSPGNNSFWPLII 947


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 257 HSGVLDGYDSTSSQNKFFPGTTQVEHMG 174
           H+ + + Y   S+QN F PG T     G
Sbjct: 476 HASLSNSYAEPSTQNSFIPGLTSKSQDG 503


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +3

Query: 63  ALNEEDVTKMLAATTHLGADNVNFQMETYVYKRRADGTHVLNLRRTWEKLVLAARAVVAI 242
           A   E+++   +A   +  D V+F ME  V+K  A      NL+   EKL      V   
Sbjct: 19  AWGSENISNSNSAIPSITND-VSFSMEASVWKENALNLDTFNLKDINEKLDYTFGVVKPP 77

Query: 243 KNPAMCSSAHHG 278
           K  ++ S  + G
Sbjct: 78  KRISLASKDYIG 89


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 379 SGNLVSKSTWCETPRNR 329
           SGN  +KS+WC +  NR
Sbjct: 302 SGNWYTKSSWCPSNSNR 318


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 208 FSQVRRKLSTWVPSARRL*T*VSIWKLTLSAPRWVVAASILVTSSSLRASTSNPPDIVAL 29
           F Q  RK ST   + +     +  WK TLS     +  ++ + + SL AS+   P  +++
Sbjct: 470 FEQALRKASTLETTDQEQ---IDTWKTTLSEKLESIWKALYI-NESLEASSKTRPPFISI 525

Query: 28  I 26
           I
Sbjct: 526 I 526


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -2

Query: 188 VEHMGTISTSFVDIGLHLEVNIVCPKMGGCSKHF-GDIFLVEGEHV*SSRH 39
           V++ G I  S   I   LE+N    K GG    F G  F +  E V  + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 33 ATMSGGLDVLALNEEDVT 86
          +T+SG +DV+ + +ED T
Sbjct: 21 STLSGAIDVIVVEQEDKT 38


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -2

Query: 260 THSGVLDGYDSTSSQNKFFPGTTQVEHMGTISTSFVDIGLHLEVN 126
           T   ++D  D+   +  +    T V HMG+     +D G++   N
Sbjct: 118 TEQDLIDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFN 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,761
Number of Sequences: 5004
Number of extensions: 34015
Number of successful extensions: 73
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)