Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00607X
(390 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 92 1e-19
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 89 1e-18
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 29 1.7
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 27 4.0
01_06_0123 - 26680635-26681097,26681204-26681329,26681439-26681674 27 4.0
06_03_0424 - 20648938-20649564,20650588-20650902 27 5.3
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355... 27 7.0
05_01_0087 + 574623-574687,574797-574871,574987-575101 27 7.0
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 26 9.2
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 26 9.2
09_02_0404 - 8592872-8593231,8593735-8594004,8595551-8595964,859... 26 9.2
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727 26 9.2
03_05_0154 - 21302056-21302418,21302920-21303198,21304745-213051... 26 9.2
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 92.3 bits (219), Expect = 1e-19
Identities = 42/75 (56%), Positives = 54/75 (72%)
Frame = +3
Query: 27 ISATMSGGLDVLALNEEDVTKMLAATTHLGADNVNFQMETYVYKRRADGTHVLNLRRTWE 206
++A G L+ E+DV MLAA HLG N +FQME YVYKRR+DG +++NL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 207 KLVLAARAVVAIKNP 251
KL LAAR +VAI+NP
Sbjct: 61 KLQLAARVIVAIENP 75
Score = 64.5 bits (150), Expect = 3e-11
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +2
Query: 242 QEPRYVFVSSSRPFGQRAVLXFAAHTGAMPIAGRFTPGAFTNQIPAAF 385
+ P+ + V S+RP+GQRAVL FA +TGA IAGR TPG FTNQ+ +F
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 89.0 bits (211), Expect = 1e-18
Identities = 39/64 (60%), Positives = 49/64 (76%)
Frame = +3
Query: 60 LALNEEDVTKMLAATTHLGADNVNFQMETYVYKRRADGTHVLNLRRTWEKLVLAARAVVA 239
L+ E+D+ MLAA HLG N +FQME YVYKRR DG +++NL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 240 IKNP 251
I+NP
Sbjct: 72 IENP 75
Score = 64.5 bits (150), Expect = 3e-11
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +2
Query: 242 QEPRYVFVSSSRPFGQRAVLXFAAHTGAMPIAGRFTPGAFTNQIPAAF 385
+ P+ + V S+RP+GQRAVL FA +TGA IAGR TPG FTNQ+ +F
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 134 PDGDLCLQTTC*WYPCAQLASYLGKTCSGCSCCRSH 241
P +C+ T C C+ K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 268 LITALRSACCTXVCRAHRCYAYCGAFHTRCF 360
L+ LR T V RAHRC A T CF
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>01_06_0123 - 26680635-26681097,26681204-26681329,26681439-26681674
Length = 274
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -2
Query: 299 VQHADRRAVMS*RTHSGVLDGYDSTSSQNKFFPGTTQVEHMGTIS-TSFVDIGLHLEVNI 123
V H D R+ + +DG + S++ K P Q ++ +++ TS +
Sbjct: 153 VYHGDHTCAHGVRSAAAAIDGQAAASAEQKHQPTPPQEQNAVSVAFTSMAVVNASTSSPF 212
Query: 122 VCPKMGGC 99
V P M C
Sbjct: 213 VSPAMSDC 220
>06_03_0424 - 20648938-20649564,20650588-20650902
Length = 313
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 234 VAIKNPAMCSSAHHGPSVSVLY*XLP 311
V++ P+ SS+HH P +S L+ LP
Sbjct: 71 VSLVTPSSISSSHHTPPLSALHIMLP 96
>06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,
3558919-3560393
Length = 1212
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 139 WRPMSTNDVLMVPMCSTCVVPGKNLFWLLVLS*P 240
WRP++ L++ S C++ G ++W+ +L P
Sbjct: 1020 WRPLADPPYLVLNKTSPCILGG--IYWIAILPSP 1051
>05_01_0087 + 574623-574687,574797-574871,574987-575101
Length = 84
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 203 GKTCSGCSCC 232
G +CSGCSCC
Sbjct: 72 GTSCSGCSCC 81
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 127 TLSAPRWVVAASILVTSSSLRASTSNP 47
T A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 195 RTWEKLVLAARAVVAIKNPAMCSSAHHGPSVSVLY 299
RTW VLA A PA + HH +++ Y
Sbjct: 2 RTWRLAVLACLCAAAAAAPAEAKTHHHTWNITYQY 36
>09_02_0404 -
8592872-8593231,8593735-8594004,8595551-8595964,
8596249-8596398
Length = 397
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 241 SRTPLCVRQLITALRSACCTXVCRAH 318
S+ P C +L+T LRSA C AH
Sbjct: 208 SKYPDCTPELLTDLRSASVNNNCYAH 233
>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
Length = 706
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 137 DGDLCLQTTC*WYPCAQLASYLGKTCSGCSCCRS 238
DG Q+ C + C L+ + +CSG CC++
Sbjct: 153 DGGTGYQSGC-FSQCRDLSGLVDGSCSGMGCCQT 185
>03_05_0154 -
21302056-21302418,21302920-21303198,21304745-21305158,
21305443-21305592
Length = 401
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 241 SRTPLCVRQLITALRSACCTXVCRAH 318
S+ P C +L+T LRSA C AH
Sbjct: 208 SKYPDCTPELLTDLRSASVNNNCYAH 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,018,438
Number of Sequences: 37544
Number of extensions: 264679
Number of successful extensions: 673
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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