Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00607X
         (390 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               109   1e-24
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.4  
SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)              27   4.1  
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_11500| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.3)               27   7.2  
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_5916| Best HMM Match : R3H (HMM E-Value=2.9e-10)                    26   9.5  
SB_51649| Best HMM Match : PAN (HMM E-Value=0.063)                     26   9.5  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  109 bits (261), Expect = 1e-24
 Identities = 47/72 (65%), Positives = 61/72 (84%)
 Frame = +3

Query: 39  MSGGLDVLALNEEDVTKMLAATTHLGADNVNFQMETYVYKRRADGTHVLNLRRTWEKLVL 218
           MSGGLD+L L EEDV K LAA  HLGA+N +FQME YVYKR++DG +++N+++TWEKL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 219 AARAVVAIKNPA 254
           AAR +V I+NPA
Sbjct: 61  AARIIVTIENPA 72



 Score = 76.2 bits (179), Expect = 9e-15
 Identities = 34/49 (69%), Positives = 40/49 (81%)
 Frame = +2

Query: 242 QEPRYVFVSSSRPFGQRAVLXFAAHTGAMPIAGRFTPGAFTNQIPAAFR 388
           + P  V V S+RP+GQRA+L +A+HTGA PIAGRFTPG FTNQI AAFR
Sbjct: 69  ENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFR 117


>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1275

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 204 EKLVLAARAVVAIKNPAMCSSAHHGPSVSVL 296
           +K+ LA RA VAIK    C + +HG    V+
Sbjct: 482 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 512


>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 204 EKLVLAARAVVAIKNPAMCSSAHHGPSVSVL 296
           +K+ LA RA VAIK    C + +HG    V+
Sbjct: 267 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 297


>SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)
          Length = 508

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 89  NACCNHPSWGRQC*LPDGDLC 151
           N CC H SW  +C  PD  +C
Sbjct: 406 NPCCAHQSWRAEC--PDEGVC 424


>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 183 AHGYHQHVVCRHRSPSGS*HCLP 115
           AH YH  +   HRSP  S H LP
Sbjct: 317 AHQYHPAISYLHRSPVPSSHLLP 339


>SB_11500| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.3)
          Length = 425

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 88  KCLLQPPILGQTMLTSRWRPMSTNDVLMVPMCSTC 192
           K LL+  +L    L  R  P+  ND LM P+C  C
Sbjct: 188 KGLLKLRVLPPRDLFFRVLPVRVNDKLMFPLCHRC 222


>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1276

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 271  ITALRSACCTXVCRAHRCYA 330
            + +L  +CC  +CRA  CYA
Sbjct: 1209 LLSLAMSCCPLLCRAVPCYA 1228


>SB_5916| Best HMM Match : R3H (HMM E-Value=2.9e-10)
          Length = 798

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 152 LQTTC*WYPCAQLASYLGKTCSGCS--CCRSHQEP 250
           L T C +  C Q  S LG+ C  C+   C SH  P
Sbjct: 704 LDTRCAFESCKQNISLLGQKCVCCTRVFCLSHHIP 738


>SB_51649| Best HMM Match : PAN (HMM E-Value=0.063)
          Length = 323

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 213 VLAARAVVAIKNPAMCSSAHHGPSVSVLY*XLPRTPVLCLL 335
           ++AAR V +  + A   SAH+   +S  Y  +P  P LC L
Sbjct: 20  IIAARDVTSAIDCADLCSAHYPQCLSFNYKAIPDKPDLCEL 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,626,475
Number of Sequences: 59808
Number of extensions: 289647
Number of successful extensions: 782
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)