Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00607X
         (390 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...    83   6e-17
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...    82   1e-16
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...    82   1e-16
At2g22340.1 68415.m02651 hypothetical protein                          33   0.090
At2g01660.2 68415.m00093 33 kDa secretory protein-related contai...    27   5.9  
At2g01660.1 68415.m00092 33 kDa secretory protein-related contai...    27   5.9  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score = 83.0 bits (196), Expect = 6e-17
 Identities = 37/64 (57%), Positives = 46/64 (71%)
 Frame = +3

Query: 60  LALNEEDVTKMLAATTHLGADNVNFQMETYVYKRRADGTHVLNLRRTWEKLVLAARAVVA 239
           L+  E DV  M AA  HLG  N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 240 IKNP 251
           I+NP
Sbjct: 72  IENP 75



 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 28/48 (58%), Positives = 36/48 (75%)
 Frame = +2

Query: 242 QEPRYVFVSSSRPFGQRAVLXFAAHTGAMPIAGRFTPGAFTNQIPAAF 385
           + P+ + V S+RP+GQRAVL FA +TGA  IAGR TPG FTNQ+  +F
Sbjct: 73  ENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSF 120


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 34/60 (56%), Positives = 46/60 (76%)
 Frame = +3

Query: 72  EEDVTKMLAATTHLGADNVNFQMETYVYKRRADGTHVLNLRRTWEKLVLAARAVVAIKNP 251
           E D+  ML+A  HLG  N N+QME YV+KRR DG +++NL +TW+KL +AAR +VAI+NP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76



 Score = 62.9 bits (146), Expect = 7e-11
 Identities = 27/48 (56%), Positives = 35/48 (72%)
 Frame = +2

Query: 242 QEPRYVFVSSSRPFGQRAVLXFAAHTGAMPIAGRFTPGAFTNQIPAAF 385
           + P+ + V S+RP+GQRAVL FA +TG   IAGR TPG FTNQ+  +F
Sbjct: 74  ENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSF 121


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 34/60 (56%), Positives = 46/60 (76%)
 Frame = +3

Query: 72  EEDVTKMLAATTHLGADNVNFQMETYVYKRRADGTHVLNLRRTWEKLVLAARAVVAIKNP 251
           E D+  ML+A  HLG  N N+QME YV+KRR DG +++NL +TW+KL +AAR +VAI+NP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76



 Score = 62.9 bits (146), Expect = 7e-11
 Identities = 27/48 (56%), Positives = 35/48 (72%)
 Frame = +2

Query: 242 QEPRYVFVSSSRPFGQRAVLXFAAHTGAMPIAGRFTPGAFTNQIPAAF 385
           + P+ + V S+RP+GQRAVL FA +TG   IAGR TPG FTNQ+  +F
Sbjct: 74  ENPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSF 121


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.090
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 110 SWGRQC*LPDGDLCLQTTC*WYPCAQLASYLGKTCSGCSC 229
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At2g01660.2 68415.m00093 33 kDa secretory protein-related contains
           Pfam PF01657: Domain of unknown function, duplicated in
           33 KDa secretory proteins
          Length = 259

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 221 SQNKFFPGTTQVEHMGTISTSFV-DIGLHLEVNIVCPKMGGCSKHFGDIFLVEGE 60
           SQ K+FPG+    ++ ++ TSFV    L+   N     + G S     ++   G+
Sbjct: 33  SQEKYFPGSPYESNVNSLLTSFVSSASLYTYNNFTTNGISGDSSSVYGLYQCRGD 87


>At2g01660.1 68415.m00092 33 kDa secretory protein-related contains
           Pfam PF01657: Domain of unknown function, duplicated in
           33 KDa secretory proteins
          Length = 288

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 221 SQNKFFPGTTQVEHMGTISTSFV-DIGLHLEVNIVCPKMGGCSKHFGDIFLVEGE 60
           SQ K+FPG+    ++ ++ TSFV    L+   N     + G S     ++   G+
Sbjct: 33  SQEKYFPGSPYESNVNSLLTSFVSSASLYTYNNFTTNGISGDSSSVYGLYQCRGD 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,154,079
Number of Sequences: 28952
Number of extensions: 191670
Number of successful extensions: 441
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)