Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00606
         (661 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1; ...    47   3e-04
UniRef50_Q4Z6Y6 Cluster: Putative uncharacterized protein; n=1; ...    35   1.5  
UniRef50_Q5CWA5 Cluster: Actin; n=2; Cryptosporidium|Rep: Actin ...    34   3.5  
UniRef50_Q891E2 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  
UniRef50_A2E4L0 Cluster: Surface antigen BspA-like; n=3; Trichom...    33   6.1  
UniRef50_P21421 Cluster: DNA-directed RNA polymerase subunit bet...    33   6.1  
UniRef50_Q09F74 Cluster: Ymf74; n=1; Tetrahymena paravorax|Rep: ...    33   8.0  
UniRef50_A2D7Y8 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 47

 Score = 47.2 bits (107), Expect = 3e-04
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = -2

Query: 135 LKLEGGWTDLANFGLELFVEVQRRFK 58
           LKLE GWTDLANFGLEL VEVQR  K
Sbjct: 20  LKLENGWTDLANFGLELPVEVQRGLK 45


>UniRef50_Q4Z6Y6 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 282

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -1

Query: 436 YLVTLHSMLNLSCNLMSVLFPEKKNFFNYSNYKDNKYI-SKEIVLDISTCVLFNGIVNHK 260
           +++  H  L    N+ S    +K + FN     D+ Y+ +KE   D   CV+  GI +H 
Sbjct: 50  HILQFHKKLKREINVYSYGIEKKDDIFNLLKKYDDIYLKNKEYYRDYFFCVILIGICSHI 109

Query: 259 SNDKCVY 239
           + D  +Y
Sbjct: 110 NTDTNIY 116


>UniRef50_Q5CWA5 Cluster: Actin; n=2; Cryptosporidium|Rep: Actin -
           Cryptosporidium parvum Iowa II
          Length = 389

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = -1

Query: 370 KKNFFN--YSNYKDN--KYISKEIVLDISTCVLF-NGIVNHKSNDKCVYIPN 230
           KK F N  +S YK+   + I KEI  D+   ++F +GIVNH+ ND     PN
Sbjct: 181 KKKFMNELFSQYKEKPEEDIIKEISNDLMDDIIFQSGIVNHEFNDNIESNPN 232


>UniRef50_Q891E2 Cluster: Putative uncharacterized protein; n=1;
           Clostridium tetani|Rep: Putative uncharacterized protein
           - Clostridium tetani
          Length = 105

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = -2

Query: 609 YFLECLNTLLCEKLFYFLLHIHTIDIFVLQFNEKIV*IVDQ*IDSEINKISISVNT-IYI 433
           ++L  L+ +LC K  YF  HIHT+++   Q +      + + I+ E   I  S++T I+I
Sbjct: 5   FYLLYLHNILCSKNVYF--HIHTLNLQTFQMSLNYFFPLKKPINPE-TLILGSIDTGIWI 61

Query: 432 W*LYTVCSI 406
           W L+T  S+
Sbjct: 62  WSLHTFASM 70


>UniRef50_A2E4L0 Cluster: Surface antigen BspA-like; n=3;
           Trichomonas vaginalis G3|Rep: Surface antigen BspA-like
           - Trichomonas vaginalis G3
          Length = 930

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = -1

Query: 406 LSCNLMSVLFPEKKNFFNYSNYKDNKYISKEIVLDISTCVLFNGIVNHKSNDKCVYIPN 230
           L+C L SV  P       YS +KD  Y+ +EIVL+ +  VL N    +  + K + +PN
Sbjct: 228 LNCGLESVHIPINCTTIEYSAFKD-CYLLREIVLNDNITVLPNFCFENTVSLKSINLPN 285


>UniRef50_P21421 Cluster: DNA-directed RNA polymerase subunit beta;
           n=5; Plasmodium|Rep: DNA-directed RNA polymerase subunit
           beta - Plasmodium falciparum
          Length = 1024

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -1

Query: 439 LYLVTLHSMLNLSCNLMSVLFPEKKNFFNYSNYKDNKYISKE 314
           L+++ L+   N+  NL+++LF  K NF  YS++  N   +K+
Sbjct: 226 LFIIKLNKFNNIYINLLNILFSIKLNFSYYSDFYINNIYNKK 267


>UniRef50_Q09F74 Cluster: Ymf74; n=1; Tetrahymena paravorax|Rep:
           Ymf74 - Tetrahymena paravorax
          Length = 144

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -1

Query: 466 QNQYQC*HHLYLVTLHSMLNLSCNLMSVLFPEKKNFFNYSNYKDNKYISKEIVLDISTCV 287
           +N     +++YL T+   LNL  +L+     EK N   Y+NYK    ++    ++I+   
Sbjct: 35  KNHLNTNNNIYLNTISHGLNLKYDLLQTQIIEKNNLI-YNNYKKINILNYNKNIEITQIF 93

Query: 286 LFNGIVN 266
            F  I+N
Sbjct: 94  KFYSIIN 100


>UniRef50_A2D7Y8 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 457

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -1

Query: 373 EKKNFFNYSNYKDNKYISKEIVLDIST-CVLFNGIVNHKSNDKCVYIP 233
           EK N  ++  +KDN+Y  KE +L++ T   ++N I+N   ++K  +IP
Sbjct: 91  EKLNISDFLEFKDNQYFIKENILNLYTQKSIYNAIIN---DNKLEFIP 135


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,361,848
Number of Sequences: 1657284
Number of extensions: 8016421
Number of successful extensions: 19323
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19313
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)