Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00606
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    26   5.5  
SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   9.7  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   9.7  

>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -1

Query: 397 NLMSVLFPEKKNFFNYSNYKDNKYISKEIVLDISTCVLFNGIVNHKSNDKCVY 239
           ++ S L  E + F +  N+K   Y SKE  L +S+    N   ++   + C++
Sbjct: 318 DIESKLQSEGRGFIHNLNFKAKNYSSKEWAL-VSSASFVNVAQDYSQQNNCLF 369


>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 394 LMSVLFPEKKNFFNYSNYKDNKYIS 320
           L  VL+PE K FF+Y     +  I+
Sbjct: 10  LFEVLYPEAKEFFDYPTIPSDSSIT 34


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 388 SVLFPEKKNFFNYSNY 341
           +V++P+  NFFNY +Y
Sbjct: 298 NVVYPDNINFFNYVDY 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,262
Number of Sequences: 5004
Number of extensions: 38868
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)