Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00606
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660...    30   1.9  
09_06_0257 + 21891523-21891578,21891911-21892421,21893021-218930...    29   4.3  
04_03_0461 - 16165126-16165419,16165947-16166195,16168510-161686...    29   4.3  
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537...    28   7.6  
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416           28   7.6  

>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
            13266361-13266623,13267637-13267847,13268420-13268590,
            13268671-13268748,13269275-13269520,13269763-13271868,
            13272122-13273904,13274113-13274216,13274752-13275108,
            13275210-13275328,13276175-13276436,13276669-13276893,
            13277075-13277214,13278087-13278159,13278431-13278532,
            13278647-13279018,13279183-13279230,13279516-13279900,
            13280440-13280558
          Length = 2574

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = -1

Query: 427  TLHSMLNLSCNLMSVLFPEKKNFFNYSNYKDNKYISKE 314
            TL ++  +S   MSVLFPEKK+  + S+ K +K  S E
Sbjct: 959  TLRAIKLISAAKMSVLFPEKKSSGSSSSSKKSKSKSTE 996


>09_06_0257 +
           21891523-21891578,21891911-21892421,21893021-21893092,
           21893571-21893875,21894085-21894196,21894514-21894750,
           21894933-21895640
          Length = 666

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 657 IFGQGSSLRTLSFDRKYFLECLNTLLCEKLFYFLLHIHTID 535
           I   GSS+  L ++R +   CL  L  +  FY+L  +H +D
Sbjct: 68  ILDPGSSM-VLMWNRVFLGSCLFALFIDPFFYYLPLVHVLD 107


>04_03_0461 -
           16165126-16165419,16165947-16166195,16168510-16168645,
           16171251-16171469,16172738-16173116,16173660-16173918,
           16176052-16176315
          Length = 599

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 463 NQYQC*HHLYLVTLHSMLNLSCNLMSVLFPEKKNFFNYSNY 341
           NQ +C HH     +  +LNL+ + +   + +KK+ + +S Y
Sbjct: 545 NQVRCDHHQQFPVVQRLLNLAVS-VPFFYDKKKDAYTFSRY 584


>02_05_0225 +
           26951993-26952165,26953169-26953567,26953644-26953797,
           26954069-26954240,26954494-26954567,26954667-26954763,
           26954888-26955000,26955168-26955283,26955960-26956017,
           26956512-26956664,26957377-26957460,26957579-26957734,
           26958401-26958469,26959212-26959300,26959398-26959560,
           26959740-26959874,26959950-26960055,26960143-26960237,
           26960508-26960753,26961567-26961635,26961772-26961837,
           26961838-26961983,26962348-26962449,26962752-26962899,
           26964183-26964239,26964315-26964445,26964535-26964623,
           26964694-26965007,26965084-26965176,26966504-26966578,
           26966834-26966895,26967254-26967356,26967518-26967676,
           26967790-26967930,26967981-26968084,26968146-26968260,
           26969017-26969169,26969256-26969417
          Length = 1646

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -1

Query: 445 HHLYLVTLHSMLNLS-CNLMSVLFP-EKKNFFNYSNYKDNKYISKEIVLDISTCVLFNGI 272
           HH+    + S+L+ +  +   VL   +K+N       + ++++ K  +  +  C+L NG+
Sbjct: 625 HHVEGAFVDSLLSSAKSHPQDVLLKLQKENMHKQEAEESSRFVHKLGLYKLQCCLLMNGL 684

Query: 271 VNHKSND 251
           V+  S D
Sbjct: 685 VHESSED 691


>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
          Length = 1030

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 445  HHLYLVTLHSMLNLSCNLMSVLFPEKKNFFNYSN 344
            H L  +T  S LNLS N ++   P+   F ++SN
Sbjct: 970  HELTFLTSLSWLNLSNNNLTGRIPQSNQFLSFSN 1003


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,407,576
Number of Sequences: 37544
Number of extensions: 188072
Number of successful extensions: 369
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)