Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00606
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81061-3|CAB02933.1|  232|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U80023-15|AAG24046.1|  343|Caenorhabditis elegans Serpentine rec...    28   6.8  
Z69902-11|CAA93766.2|  935|Caenorhabditis elegans Hypothetical p...    27   8.9  
AL033535-1|CAB70217.1|  935|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 400 CNLMSVLFPEKKNFFNYSNYKDNKYISKEIVLDI 299
           C+L++V F +K  F N   ++D KY+ KE  + +
Sbjct: 150 CSLVTVDFMKKFPFVNLLRFEDQKYLLKEFYIKL 183


>Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical
           protein H12I19.5b protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +3

Query: 471 SHYQFIDQQSILFFH*TVKRIYLLYVCVRENKTVFHTIMYLSIPRNIFYQNLR 629
           S++QFI    + F+H  +KRI  LY+ V  + ++F   ++  IP      NLR
Sbjct: 61  SNFQFI----VAFYHRRLKRILPLYLLVIMSSSIF---LFWMIPDTALLTNLR 106


>Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical
           protein H12I19.5a protein.
          Length = 607

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +3

Query: 471 SHYQFIDQQSILFFH*TVKRIYLLYVCVRENKTVFHTIMYLSIPRNIFYQNLR 629
           S++QFI    + F+H  +KRI  LY+ V  + ++F   ++  IP      NLR
Sbjct: 61  SNFQFI----VAFYHRRLKRILPLYLLVIMSSSIF---LFWMIPDTALLTNLR 106


>Z81061-3|CAB02933.1|  232|Caenorhabditis elegans Hypothetical
           protein F14H8.4 protein.
          Length = 232

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 424 LHSMLNLSCNLMSVLFPEKKNFFNYSNYKDNKYISK 317
           ++ ++ L CN +++L    + FF  S+ K +KY+ K
Sbjct: 101 INGLIQLFCNQVNILCHHYEIFFRESSVKVDKYVEK 136


>U80023-15|AAG24046.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein200 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 639 SLRTLSFDRKYFLECLNTLLCEKLFYFLLHIHT-IDIFVLQFNEKIV*IV 493
           S RT +  RK+F+  L  L+   +F+F    +  + + +  +N+ I+ I+
Sbjct: 233 SRRTFNLQRKFFITLLIQLIVPLVFFFFPSFYVLVSVIIKYYNQAILNIL 282


>Z69902-11|CAA93766.2|  935|Caenorhabditis elegans Hypothetical
           protein C47D12.8 protein.
          Length = 935

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 584 NVFKHSKKYFLSKLKVRNDEPCPKM 658
           N  +H + YF+SKLK  N E  PK+
Sbjct: 72  NTNEHDESYFVSKLKEHNVECDPKV 96


>AL033535-1|CAB70217.1|  935|Caenorhabditis elegans Hypothetical
           protein C47D12.8 protein.
          Length = 935

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 584 NVFKHSKKYFLSKLKVRNDEPCPKM 658
           N  +H + YF+SKLK  N E  PK+
Sbjct: 72  NTNEHDESYFVSKLKEHNVECDPKV 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,138,397
Number of Sequences: 27780
Number of extensions: 213581
Number of successful extensions: 504
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)