Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00604
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.7  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   7.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.9  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 366 HHDDVEVSRRLVCV*KAENLNIHFVS*HTILA 461
           H    E     VC+   E + +HF + H  +A
Sbjct: 183 HQSGSEAEAEFVCIATPEAIELHFTTDHPSVA 214


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +1

Query: 7   RRWHHHDQRAGHRDEVARTEPHRSRTSRHDQ*SRRGRKRHDRLSR 141
           +R HH      H    A  + HR    +  Q  R+ +++ +R  R
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRLR 183


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +1

Query: 1   QRRRWHHHDQRAGHRDEVARTEPHRSRTSRHDQ*SRRGRKR 123
           Q+++ HH D  + H     R     S      Q +  GRK+
Sbjct: 101 QQQQQHHQDSSSEHASNQERFGYFSSLKDHQHQFAELGRKK 141


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 510 EVFNLSQTLEKCRSNTMLILCVMK 439
           E  N +++ +KC +    I+C  K
Sbjct: 117 ECINANKSTDKCENGLNFIICFSK 140


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 13/65 (20%), Positives = 27/65 (41%)
 Frame = +2

Query: 137 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAERATS*PTSERNSLTRRSTR*F 316
           PE+   + RK +    E++   +  +    G+G I + +       +E  SL+   +   
Sbjct: 259 PEYQCAVKRKEEKAQKEKDKPNSTTMNGSPGSGGIRSDQMGVKIEPAEAESLSTSGSSGI 318

Query: 317 ARPIS 331
             P+S
Sbjct: 319 LTPVS 323


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 274 GWS*RGALGRGDEA 233
           GWS RG +  G+EA
Sbjct: 377 GWSARGLVSDGNEA 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,966
Number of Sequences: 438
Number of extensions: 2050
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)