Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00603X
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   3.1  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   5.4  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    24   9.4  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    24   9.4  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    24   9.4  

>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
 Frame = +2

Query: 320 CINRRNEPLTRTIA-VAWD------SQNETMAQATMHLTALC 424
           C N  N PLT+  A  +W       S +ET+ QAT  LT LC
Sbjct: 383 CFNSMN-PLTKCAAQTSWIRLIHEFSLSETLTQATKRLTLLC 423


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 433  SSITQCGQMHGGLCHCFIL*IPCYRNSPSKRFIPTVNT 320
            S+IT    +H GL H  +L +  + +S  + F+  +NT
Sbjct: 889  SNITSHELLHSGLIHNLLLSLKKFGSSSLRTFLLAMNT 926


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/64 (20%), Positives = 29/64 (45%)
 Frame = +2

Query: 254 SSECQQMGSDFGSSTSKNTKWECINRRNEPLTRTIAVAWDSQNETMAQATMHLTALCNTA 433
           ++ C +M    GS T + ++W  ++       +    AW+  N+   Q+ +H  +L  ++
Sbjct: 314 NATCSKMTWIMGSPTKEKSQWGSVSTTGVSNQQNHPAAWNPDNK--PQSIVHWDSLRESS 371

Query: 434 RDNP 445
              P
Sbjct: 372 PSIP 375


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 439 VPS-SITQCGQMHGGLCHCFIL*IPCYRNSPSKRFIPTVNTFPF 311
           VP+ +++Q G  H       +   P    +PS   IP++N  PF
Sbjct: 305 VPNPNLSQMGPSHSSSVPSNLSPNPAQNENPSTTSIPSINNQPF 348


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 445 GIVPSSITQCGQMHGGLCHCFIL*IPCYRNSP 350
           G   S+I  CGQ +G  C C    IP Y   P
Sbjct: 391 GYQHSTIQHCGQEYGCNCDC-PFNIPDYETKP 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,787
Number of Sequences: 5004
Number of extensions: 41963
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)